Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Forward (+)

5553674 .. 5556698

Gene Structure 3025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54829

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATAGATGCGGGTGGACGGGATATCTGGTTTGTGAGAGTATCTTTGGCTCGGAAGCTGCGGTCGGAGAGGGATTTCATTTGCCTCTCTTGGTGTACGGAGGCGGCTGCATCTGGGGTTGGGATCAGATCGGATTTGGATCCCGTGGTGTCTTGCGGCGGTTGGAGGGGAGGTCAGGCTCGATGGATAGTAGGATCGGATCGATGGGTTGACGGGTTGGTGGAGGGAAACGGAGCGGAGGCGGATCTTTATCGGATCGGAGTGGGGATTGCTGGGCGAAATCACGACGGTGGATTGGGTGTAGCAGAGCCATTCCGGATTGGTGGATCGGGATCGCTGGTTGGTGGTGGGTTGGAGGAGGGCGGTCGTGCTGGCCTGTTTACTGGATTGGATTTTCGATCTGGATTTGGGCCATACTGGTTTGGGAGTTTGATGGGGTGTGGGATCCTTCGCTGTTGGTCCATCAGCGGCGGGATGGCGTTGGTGGTGAGGGTCCGACCTTGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGACCGGCGGTAGCTTAGGCTTCTTTATCCTCTCTTCGTTTCAGCAATTACACAATGCCATAAAATTTTTCTCTTCCGTGTTCACCTCTCTTCATTTCGGAAATACCGTCTTCATGACTGTGGTTTCATCTCTCTCTCTGACTGCCTTCATCTCGCCTCTCATCGGTGTTCGAAATCGAAGCCTCAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

26.11

Weight (kDa)

8.57

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	614
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	502, 713
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	58, 541, 548, 564
AluI	AGCT	4 cut(s)	58, 541, 548, 564
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	373, 410
ApeKI	GCWGC	4 cut(s)	58, 107, 538, 541
ApoI	RAATTY	1 cut(s)	614
AspS9I	GGNCC	4 cut(s)	410, 459, 493, 552
AsuHPI	GGTGA	2 cut(s)	499, 625
AsuII	TTCGAA	1 cut(s)	721
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	3 cut(s)	459, 493, 552
BamHI	GGATCC	2 cut(s)	139, 444
BbsI	GAAGAC	1 cut(s)	652
BbvI	GCAGC	4 cut(s)	45, 94, 528, 550
BccI	CCATC	5 cut(s)	177, 198, 427, 469, 470
BfaI	CTAG	1 cut(s)	545
BisI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
BlsI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
Bme18I	GGWCC	3 cut(s)	459, 493, 552
BmgT120I	GGNCC	4 cut(s)	410, 459, 493, 552
BmiI	GGNNCC	3 cut(s)	141, 446, 494
BmsI	GCATC	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	652
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu14I	TTCGAA	1 cut(s)	721
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	3 cut(s)	138, 249, 331
BsaJI	CCNNGG	2 cut(s)	144, 500
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 713
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	388, 422
Bse8I	GATNNNNATC	3 cut(s)	138, 249, 331
BseAI	TCCGGA	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	144, 500
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	3 cut(s)	138, 249, 331
BseLI	CCNNNNNNNGG	2 cut(s)	502, 713
BseNI	ACTGG	2 cut(s)	388, 422
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	45, 94, 528, 550
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	557
Bsh1285I	CGRYCG	2 cut(s)	65, 367
BshFI	GGCC	2 cut(s)	375, 412
BshVI	ATCGAT	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	65, 367
BsiSI	CCGG	2 cut(s)	316, 555
BslI	CCNNNNNNNGG	2 cut(s)	502, 713
BsnI	GGCC	2 cut(s)	375, 412
Bsp119I	TTCGAA	1 cut(s)	721
Bsp13I	TCCGGA	1 cut(s)	315
BspANI	GGCC	2 cut(s)	375, 412
BspDI	ATCGAT	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	3 cut(s)	141, 446, 494
BspOI	GCTAGC	1 cut(s)	548
BspT104I	TTCGAA	1 cut(s)	721
BsrBI	CCGCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	388, 422
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	144, 500
BssT1I	CCWWGG	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	290, 658, 670
Bst6I	CTCTTC	3 cut(s)	589, 628, 645
BstBI	TTCGAA	1 cut(s)	721
BstC8I	GCNNGC	2 cut(s)	373, 546
BstDEI	CTNAG	1 cut(s)	565
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	480
BstMCI	CGRYCG	2 cut(s)	65, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstV1I	GCAGC	4 cut(s)	45, 94, 528, 550
BstV2I	GAAGAC	1 cut(s)	652
BstX2I	RGATCY	3 cut(s)	139, 244, 444
BstYI	RGATCY	3 cut(s)	139, 244, 444
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	375, 412
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	373, 546
CciI	TCATGA	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	4 cut(s)	410, 459, 493, 552
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	664
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	589, 628, 645
EarI	CTCTTC	3 cut(s)	589, 628, 645
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	500
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	459, 493, 552
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	667
FaiI	YATR	3 cut(s)	415, 611, 665
FatI	CATG	1 cut(s)	663
FauI	CCCGC	2 cut(s)	4, 464
Fnu4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FokI	GGATG	1 cut(s)	487
Fsp4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	375, 412
HapII	CCGG	2 cut(s)	316, 555
Hin1II	CATG	1 cut(s)	667
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	316, 555
HphI	GGTGA	2 cut(s)	499, 625
Hpy166II	GTNNAC	5 cut(s)	17, 96, 211, 381, 633
Hpy188III	TCNNGA	5 cut(s)	284, 316, 330, 402, 664
Hpy8I	GTNNAC	5 cut(s)	17, 96, 211, 381, 633
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	458, 706
HpyCH4III	ACNGT	3 cut(s)	290, 658, 670
HpyCH4V	TGCA	2 cut(s)	110, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	1 cut(s)	565
Hsp92II	CATG	1 cut(s)	667
Kpn2I	TCCGGA	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	4 cut(s)	45, 94, 528, 550
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	545
MbiI	CCGCTC	1 cut(s)	236
MboII	GAAGA	4 cut(s)	576, 615, 632, 652
MflI	RGATCY	3 cut(s)	139, 244, 444
MluCI	AATT	2 cut(s)	596, 614
MmeI	TCCRAC	4 cut(s)	45, 143, 333, 520
MroI	TCCGGA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	288, 668
MspA1I	CMGCKG	2 cut(s)	468, 541
MspI	CCGG	2 cut(s)	316, 555
MwoI	GCNNNNNNNGC	1 cut(s)	522
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	3 cut(s)	141, 446, 494
NspV	TTCGAA	1 cut(s)	721
OliI	CACNNNNGTG	1 cut(s)	288
PagI	TCATGA	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PkrI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	141, 446, 494
PspPI	GGNCC	4 cut(s)	410, 459, 493, 552
PsuI	RGATCY	3 cut(s)	139, 244, 444
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	2 cut(s)	288, 668
SatI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
Sau96I	GGNCC	4 cut(s)	410, 459, 493, 552
SetI	ASST	8 cut(s)	60, 175, 502, 537, 543, 550, 566, 638
SfaNI	GCATC	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	721
SinI	GGWCC	3 cut(s)	459, 493, 552
SmiMI	CAYNNNNRTG	2 cut(s)	288, 668
Sse9I	AATT	2 cut(s)	596, 614
SspMI	CTAG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	290, 658, 670
TaqI	TCGA	5 cut(s)	181, 202, 397, 721, 727
TasI	AATT	2 cut(s)	596, 614
TauI	GCSGC	5 cut(s)	107, 159, 471, 516, 519
TseI	GCWGC	4 cut(s)	58, 107, 538, 541
TspDTI	ATGAA	5 cut(s)	67, 632, 652, 666, 688
TspGWI	ACGGA	3 cut(s)	113, 246, 616
VpaK11BI	GGWCC	3 cut(s)	459, 493, 552
XapI	RAATTY	1 cut(s)	614
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.