Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006323.1

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Reverse (-)

146436 .. 147943

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006323.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgatggatgcgggtggacgggatatctggtttgtgagagtatctttggctcggaagctgcggtcggagagggatttcatttgcctctctcggtgtacggaggcggctgcatctggggttgggatcagatcggatttggatcccgtggtgtcttgcggcggttggaggggaggtcgggctcgatggatagtaggatcggatcgatgggttgacgggttggtggagggaaacggagcggaggcggatctttgccggatcggagtggggattgctgggcggaatcacgacggtggattgggtgtagcagagccattccggattggtggatcgggatcgctggttggtggtgggttggaggagggcggtcgtgctggcctgtttactggattggattttcgatctggatttgggccatactggtttgggagtttgatggggtgtgggattcttcgctgttggtccatcagcggcgggatggcgttggtggtgagggtccgaccttgggggaactgcggcggcggtggctgtggcgaggtgcagctgctagctttgaccggcggtagcttaggtttcttagaacgtcaagaacatcgagaaaggaggctcagggtgaagggaccagtgaagatgcctaccaaggttctgcacattaccaccaggaagtcaccctatggagaaggtaccaacacatgggacagatttgagttgcgtgggcataagcgtgttattgatctcttcagctctcctgatgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

251

Amino Acids

26.92

Weight (kDa)

9.34

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	680
AccB1I	GGYRCC	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	690
AccBSI	CCGCTC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	315
AclWI	GGATC	9 cut(s)	131, 134, 147, 202, 207, 252, 263, 334, 340
AcuI	CTGAAG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	97, 682
AfiI	CCNNNNNNNGG	2 cut(s)	502, 690
AjnI	CCWGG	1 cut(s)	656
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	5 cut(s)	58, 541, 548, 564, 741
AluI	AGCT	5 cut(s)	58, 541, 548, 564, 741
AlwI	GGATC	9 cut(s)	131, 134, 147, 202, 207, 252, 263, 334, 340
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	373, 410
ApeKI	GCWGC	4 cut(s)	58, 107, 538, 541
Asp718I	GGTACC	1 cut(s)	680
AspS9I	GGNCC	4 cut(s)	410, 459, 493, 617
AsuHPI	GGTGA	3 cut(s)	499, 622, 657
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	3 cut(s)	459, 493, 617
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	45, 94, 528, 550
BccI	CCATC	5 cut(s)	177, 198, 427, 469, 470
BciT130I	CCWGG	1 cut(s)	658
BfaI	CTAG	1 cut(s)	545
BisI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
BlsI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
Bme1390I	CCNGG	1 cut(s)	658
Bme18I	GGWCC	3 cut(s)	459, 493, 617
BmgT120I	GGNCC	4 cut(s)	410, 459, 493, 617
BmiI	GGNNCC	4 cut(s)	141, 494, 618, 682
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	2 cut(s)	119, 618
BmtI	GCTAGC	1 cut(s)	548
Bpu10I	CCTNAGC	2 cut(s)	565, 605
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	138, 331
BsaJI	CCNNGG	3 cut(s)	144, 500, 636
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 690
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	388, 422, 620
Bse8I	GATNNNNATC	2 cut(s)	138, 331
BseAI	TCCGGA	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	658
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	144, 500, 636
BseGI	GGATG	2 cut(s)	13, 480
BseJI	GATNNNNATC	2 cut(s)	138, 331
BseLI	CCNNNNNNNGG	2 cut(s)	502, 690
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	3 cut(s)	388, 422, 620
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	45, 94, 528, 550
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	2 cut(s)	557, 629
Bsh1285I	CGRYCG	2 cut(s)	65, 367
BshFI	GGCC	2 cut(s)	375, 412
BshNI	GGYRCC	1 cut(s)	680
BshVI	ATCGAT	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	65, 367
BsiSI	CCGG	3 cut(s)	253, 316, 555
BslFI	GGGAC	2 cut(s)	630, 707
BslI	CCNNNNNNNGG	2 cut(s)	502, 690
BsmFI	GGGAC	2 cut(s)	630, 707
BsnI	GGCC	2 cut(s)	375, 412
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	315
BspANI	GGCC	2 cut(s)	375, 412
BspCNI	CTCAG	1 cut(s)	618
BspDI	ATCGAT	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	315
BspLI	GGNNCC	4 cut(s)	141, 494, 618, 682
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	9 cut(s)	131, 134, 147, 202, 207, 252, 263, 334, 340
BspT107I	GGYRCC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	388, 422, 620
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	3 cut(s)	144, 500, 636
BssT1I	CCWWGG	2 cut(s)	500, 636
Bst2UI	CCWGG	1 cut(s)	658
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	373, 546
BstDEI	CTNAG	3 cut(s)	565, 574, 605
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	13, 480
BstMCI	CGRYCG	2 cut(s)	65, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstNI	CCWGG	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	656
BstV1I	GCAGC	4 cut(s)	45, 94, 528, 550
BstX2I	RGATCY	2 cut(s)	139, 244
BstYI	RGATCY	2 cut(s)	139, 244
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	375, 412
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	13, 480
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	373, 546
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	4 cut(s)	410, 459, 493, 617
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	96, 681
CviAII	CATG	1 cut(s)	690
CviQI	GTAC	2 cut(s)	96, 681
DdeI	CTNAG	3 cut(s)	565, 574, 605
Eam1104I	CTCTTC	1 cut(s)	740
EarI	CTCTTC	1 cut(s)	740
EciI	GGCGGA	2 cut(s)	257, 292
Eco130I	CCWWGG	2 cut(s)	500, 636
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	459, 493, 617
Eco57I	CTGAAG	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	656
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	500, 636
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	2 cut(s)	500, 636
FaeI	CATG	1 cut(s)	693
FaiI	YATR	4 cut(s)	415, 672, 691, 717
FaqI	GGGAC	2 cut(s)	630, 707
FatI	CATG	1 cut(s)	689
FauI	CCCGC	2 cut(s)	4, 464
Fnu4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FokI	GGATG	2 cut(s)	20, 487
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	375, 412
HapII	CCGG	3 cut(s)	253, 316, 555
Hin1II	CATG	1 cut(s)	693
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	280, 445
HpaII	CCGG	3 cut(s)	253, 316, 555
HphI	GGTGA	3 cut(s)	499, 622, 657
Hpy166II	GTNNAC	4 cut(s)	17, 96, 211, 381
Hpy188I	TCNGA	7 cut(s)	54, 67, 128, 133, 199, 260, 497
Hpy188III	TCNNGA	7 cut(s)	284, 316, 330, 402, 584, 593, 746
Hpy8I	GTNNAC	4 cut(s)	17, 96, 211, 381
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	607, 671
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	3 cut(s)	110, 538, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	3 cut(s)	565, 574, 605
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	693
Kpn2I	TCCGGA	1 cut(s)	315
KpnI	GGTACC	1 cut(s)	684
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	4 cut(s)	45, 94, 528, 550
LweI	GCATC	2 cut(s)	119, 618
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	663
MbiI	CCGCTC	1 cut(s)	236
MboII	GAAGA	3 cut(s)	440, 637, 727
MflI	RGATCY	2 cut(s)	139, 244
MhlI	GDGCHC	1 cut(s)	181
MmeI	TCCRAC	4 cut(s)	45, 143, 333, 520
MroI	TCCGGA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	288, 720
MspA1I	CMGCKG	2 cut(s)	468, 541
MspI	CCGG	3 cut(s)	253, 316, 555
MspR9I	CCNGG	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	658
MwoI	GCNNNNNNNGC	1 cut(s)	522
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	1 cut(s)	693
NlaIV	GGNNCC	4 cut(s)	141, 494, 618, 682
NmuCI	GTSAC	1 cut(s)	663
OliI	CACNNNNGTG	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	280, 445
PflMI	CCANNNNNTGG	1 cut(s)	690
PkrI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
Psp6I	CCWGG	1 cut(s)	656
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	656
PspN4I	GGNNCC	4 cut(s)	141, 494, 618, 682
PspPI	GGNCC	4 cut(s)	410, 459, 493, 617
PsuI	RGATCY	2 cut(s)	139, 244
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	2 cut(s)	97, 682
RsaNI	GTAC	2 cut(s)	96, 681
RseI	CAYNNNNRTG	2 cut(s)	288, 720
SatI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
Sau96I	GGNCC	4 cut(s)	410, 459, 493, 617
ScrFI	CCNGG	1 cut(s)	658
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	2 cut(s)	119, 618
SinI	GGWCC	3 cut(s)	459, 493, 617
SmiMI	CAYNNNNRTG	2 cut(s)	288, 720
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	2 cut(s)	500, 636
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	181, 202, 397, 592
TauI	GCSGC	5 cut(s)	107, 159, 471, 516, 519
TfiI	GAWTC	2 cut(s)	280, 445
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	1 cut(s)	663
TseI	GCWGC	4 cut(s)	58, 107, 538, 541
Tsp45I	GTSAC	1 cut(s)	663
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	2 cut(s)	113, 246
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	690
VpaK11BI	GGWCC	3 cut(s)	459, 493, 617
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.