Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Forward (+)

60208970 .. 60212027

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG444700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATAGATGCGGGTGGACGGGATATCTGGTTTGTGAGAGTATCTTTGGCTCGGAAGCTGCGGTCGGAGAGGGATTTCATTTGCCTCTCTCGGTGTACGGAGGCGGCTGCATCTGGGGTTGGGATCAGATCGGATTTGGATCCCGTGGTGTCTTGCGGCGGTTGGAGGGGAGGTCGGGCTCGATGGATAGTAGGATCGGATCGATGGGTTGACGGGTTGGTGGAGGGAAACGGAGCGGAGGCGGATATTTACCAGATCGGAGTGGGGATTGCTGGGCGAAATCACGACGGTGGATTGGGTGTAGCAGAGCCATTCCGGATTGGTGGATCGGGATCGCTGGTTGGTGGTGGGTTGGAGGAGGGCGGTCGTGCTGGCCTGTTTACTGGATTGGATTTTCGATCTGGATTTGGGCCATACTGGTTTGGGAGTTTGATGGGGTGTGGGATCCTTCGTTGTTGGTCCATCAGCGGCGGGATGGCGTTGGTGGTGAGGGTCCGACCTTGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGACCGGCGGTAGCTTAGGCTTCTTAGAACGTCAAGAACATCGAGAAAGGTCCTTACTTTCCCATGTTCCTCTATTCAATTTCTGCTTAATTCATTATCATTTGTTATATATTGCTTATACCATCGTTTTTTCTTGTAAATTTGTATTGAAAATGGACTATAATGTTAGTAAAAGACCCATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

26.43

Weight (kDa)

8.62

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	315
AclWI	GGATC	9 cut(s)	131, 134, 147, 202, 207, 334, 340, 439, 452
AcsI	RAATTY	1 cut(s)	689
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	628, 700
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	58, 541, 548, 564
AluI	AGCT	4 cut(s)	58, 541, 548, 564
AlwI	GGATC	9 cut(s)	131, 134, 147, 202, 207, 334, 340, 439, 452
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	373, 410
ApeKI	GCWGC	4 cut(s)	58, 107, 538, 541
ApoI	RAATTY	1 cut(s)	689
AspS9I	GGNCC	5 cut(s)	410, 459, 493, 552, 600
AsuHPI	GGTGA	1 cut(s)	499
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	4 cut(s)	459, 493, 552, 600
BamHI	GGATCC	2 cut(s)	139, 444
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	45, 94, 528, 550
BccI	CCATC	6 cut(s)	177, 198, 427, 469, 470, 680
BfaI	CTAG	1 cut(s)	545
BisI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
BlsI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
Bme18I	GGWCC	4 cut(s)	459, 493, 552, 600
BmgT120I	GGNCC	5 cut(s)	410, 459, 493, 552, 600
BmiI	GGNNCC	3 cut(s)	141, 446, 494
BmsI	GCATC	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	565
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	138, 331
BsaJI	CCNNGG	2 cut(s)	144, 500
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	388, 422
Bse8I	GATNNNNATC	2 cut(s)	138, 331
BseAI	TCCGGA	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	144, 500
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	2 cut(s)	138, 331
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseNI	ACTGG	2 cut(s)	388, 422
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	45, 94, 528, 550
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	557
Bsh1285I	CGRYCG	2 cut(s)	65, 367
BshFI	GGCC	2 cut(s)	375, 412
BshVI	ATCGAT	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	65, 367
BsiSI	CCGG	2 cut(s)	316, 555
BslI	CCNNNNNNNGG	1 cut(s)	502
BsnI	GGCC	2 cut(s)	375, 412
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	315
BspANI	GGCC	2 cut(s)	375, 412
BspDI	ATCGAT	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	141, 446, 494
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	9 cut(s)	131, 134, 147, 202, 207, 334, 340, 439, 452
BsrBI	CCGCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	388, 422
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	144, 500
BssT1I	CCWWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	373, 546
BstDEI	CTNAG	2 cut(s)	565, 574
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	480
BstMCI	CGRYCG	2 cut(s)	65, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstV1I	GCAGC	4 cut(s)	45, 94, 528, 550
BstX2I	RGATCY	2 cut(s)	139, 444
BstYI	RGATCY	2 cut(s)	139, 444
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	375, 412
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	480
Cac8I	GCNNGC	2 cut(s)	373, 546
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	5 cut(s)	410, 459, 493, 552, 600
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	1 cut(s)	614
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	565, 574
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	500
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	4 cut(s)	459, 493, 552, 600
EcoO109I	RGGNCCY	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	1 cut(s)	617
FaiI	YATR	7 cut(s)	415, 615, 658, 660, 669, 711, 736
FatI	CATG	1 cut(s)	613
FauI	CCCGC	2 cut(s)	4, 464
Fnu4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	375, 412
HapII	CCGG	2 cut(s)	316, 555
Hin1II	CATG	1 cut(s)	617
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	316, 555
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	4 cut(s)	17, 96, 211, 381
Hpy188I	TCNGA	7 cut(s)	54, 67, 128, 133, 199, 260, 497
Hpy188III	TCNNGA	6 cut(s)	284, 316, 330, 402, 584, 593
Hpy8I	GTNNAC	4 cut(s)	17, 96, 211, 381
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	2 cut(s)	110, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	2 cut(s)	565, 574
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	617
Kpn2I	TCCGGA	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	4 cut(s)	45, 94, 528, 550
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	580
MbiI	CCGCTC	1 cut(s)	236
MflI	RGATCY	2 cut(s)	139, 444
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	3 cut(s)	628, 639, 689
MmeI	TCCRAC	4 cut(s)	45, 143, 333, 520
MroI	TCCGGA	1 cut(s)	315
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	2 cut(s)	468, 541
MspI	CCGG	2 cut(s)	316, 555
MwoI	GCNNNNNNNGC	1 cut(s)	522
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	3 cut(s)	141, 446, 494
OliI	CACNNNNGTG	1 cut(s)	288
PkrI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
PpuMI	RGGWCCY	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	600
PspFI	CCCAGC	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	141, 446, 494
PspPI	GGNCC	5 cut(s)	410, 459, 493, 552, 600
PspPPI	RGGWCCY	1 cut(s)	600
PsuI	RGATCY	2 cut(s)	139, 444
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
Sau96I	GGNCC	5 cut(s)	410, 459, 493, 552, 600
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	9 cut(s)	60, 175, 502, 537, 543, 550, 566, 583, 602
SfaNI	GCATC	1 cut(s)	119
SinI	GGWCC	4 cut(s)	459, 493, 552, 600
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	628, 639, 689
SspMI	CTAG	1 cut(s)	545
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	181, 202, 397, 592
TasI	AATT	3 cut(s)	628, 639, 689
TauI	GCSGC	5 cut(s)	107, 159, 471, 516, 519
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TseI	GCWGC	4 cut(s)	58, 107, 538, 541
TspDTI	ATGAA	3 cut(s)	67, 632, 723
TspGWI	ACGGA	2 cut(s)	113, 246
VpaK11BI	GGWCC	4 cut(s)	459, 493, 552, 600
XapI	RAATTY	1 cut(s)	689
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.