Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003929.1

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Reverse (-)

9175 .. 13969

Gene Structure 4795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003929.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgggcttcaaaagccctcaagaatcaccaggaaaggtggccggaaaaagaagaaccgatggaggcgatttcttccccgatgaggttctcttctcggttattggattatccgtaacaggggcccttgatgcaatcttgccacacgagcattcaaaggagatccgccgctatctttataaccatcagaacaaagatggtggttggggactgcatatagaagggccaagtacaatgttttgtacagctttgtcctatgtgagtttgagattgctcggagaggagatggatggcagtgatggcgccatggagaaggcaagaaaatggattcttcaccgtggaggagttaccaccatcccatcatggggaaagatgtggctctcagtttccctattgcgcctcacttttttctttactcccctcgtccaactgcgtctcagtgctggctctggtctttggcagcaccagcgcttgatggatgtggtcggaccggatagctgtttcgtgagtgtgttgactgtattcgtatctcgaaaactggggttggagagggttttaatggtgttgggtccttgccggatatttgtgatgtctcacgaaagcagagtggaggctgattttcgccggttcagagtgtggatgcatggctgtgggctgggagcaataatacattttcagatcggtggatcgtgctggccggattgtcagattggactttcgatctggtttctggccacaccggcttggggttgggatgggatttgggatctttcgctggtgtcccgttggcgacagggtggtaagggttcgacgtcggtactcgtgcaacggcatggcgtggtcgcaggtgatggcgatttggagcatttgtggattgccagtgttgacattaaggtggcaatggagttgggtttagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

305

Amino Acids

33.89

Weight (kDa)

8.23

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AarI	CACCTGC	1 cut(s)	833
AatII	GACGTC	1 cut(s)	812
Acc36I	ACCTGC	1 cut(s)	833
AccB1I	GGYRCC	1 cut(s)	299
AciI	CCGC	2 cut(s)	163, 166
AclWI	GGATC	3 cut(s)	154, 691, 771
AcoI	YGGCCR	3 cut(s)	39, 692, 729
AcyI	GRCGYC	2 cut(s)	300, 809
AfaI	GTAC	3 cut(s)	229, 241, 816
AfeI	AGCGCT	1 cut(s)	467
AfiI	CCNNNNNNNGG	5 cut(s)	82, 117, 361, 362, 743
AgsI	TTSAA	2 cut(s)	10, 153
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	245, 495
AluI	AGCT	2 cut(s)	245, 495
Alw26I	GTCTC	2 cut(s)	437, 594
AlwI	GGATC	3 cut(s)	154, 691, 771
Aor51HI	AGCGCT	1 cut(s)	467
AoxI	GGCC	5 cut(s)	39, 120, 221, 692, 729
ApaI	GGGCCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	457
AspLEI	GCGC	3 cut(s)	302, 396, 468
AspS9I	GGNCC	5 cut(s)	120, 121, 221, 485, 566
AsuHPI	GGTGA	3 cut(s)	18, 323, 857
AvaII	GGWCC	2 cut(s)	485, 566
BaeGI	GKGCMC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	124
BauI	CACGAG	2 cut(s)	143, 818
BbvI	GCAGC	1 cut(s)	469
BceAI	ACGGC	1 cut(s)	842
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	437, 594
BfoI	RGCGCY	2 cut(s)	303, 469
BfuAI	ACCTGC	1 cut(s)	833
BglI	GCCNNNNNGGC	1 cut(s)	737
BisI	GCNGC	2 cut(s)	166, 458
BlsI	GCNGC	2 cut(s)	167, 459
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	485, 566
BmgT120I	GGNCC	5 cut(s)	120, 121, 221, 485, 566
BmiI	GGNNCC	4 cut(s)	121, 122, 301, 567
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	118, 627
BmuI	ACTGGG	1 cut(s)	545
BsaHI	GRCGYC	2 cut(s)	300, 809
BsaJI	CCNNGG	2 cut(s)	303, 334
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	851, 881
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 117, 361, 362, 743
Bse118I	RCCGGY	2 cut(s)	621, 736
Bse1I	ACTGG	2 cut(s)	540, 876
Bse3DI	GCAATG	1 cut(s)	903
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	303, 334
BseGI	GGATG	5 cut(s)	292, 351, 481, 642, 757
BseLI	CCNNNNNNNGG	5 cut(s)	82, 117, 361, 362, 743
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	2 cut(s)	393, 448
BseNI	ACTGG	2 cut(s)	540, 876
BseRI	GAGGAG	2 cut(s)	293, 354
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	469
BseYI	CCCAGC	1 cut(s)	652
BshFI	GGCC	5 cut(s)	41, 122, 223, 694, 731
BshNI	GGYRCC	1 cut(s)	299
BsiSI	CCGG	6 cut(s)	42, 488, 574, 622, 695, 737
BslFI	GGGAC	2 cut(s)	219, 763
BslI	CCNNNNNNNGG	5 cut(s)	82, 117, 361, 362, 743
BsmAI	GTCTC	2 cut(s)	437, 594
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	219, 763
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	5 cut(s)	41, 122, 223, 694, 731
Bsp120I	GGGCCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	239
Bsp143I	GATC	5 cut(s)	159, 675, 683, 717, 763
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	163, 166
BspANI	GGCC	5 cut(s)	41, 122, 223, 694, 731
BspCNI	CTCAG	2 cut(s)	392, 447
BspLI	GGNNCC	4 cut(s)	121, 122, 301, 567
BspMI	ACCTGC	1 cut(s)	833
BspPI	GGATC	3 cut(s)	154, 691, 771
BspT107I	GGYRCC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	903
BsrFI	RCCGGY	2 cut(s)	621, 736
BsrGI	TGTACA	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	540, 876
BssAI	RCCGGY	2 cut(s)	621, 736
BssECI	CCNNGG	2 cut(s)	303, 334
BssMI	GATC	5 cut(s)	159, 675, 683, 717, 763
BssNI	GRCGYC	2 cut(s)	300, 809
BssSI	CACGAG	2 cut(s)	143, 818
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	2 cut(s)	143, 818
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	335, 517
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	300, 809
BstAUI	TGTACA	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	442, 692
BstDEI	CTNAG	2 cut(s)	379, 434
BstDSI	CCRYGG	2 cut(s)	303, 334
BstF5I	GGATG	5 cut(s)	292, 351, 481, 642, 757
BstH2I	RGCGCY	2 cut(s)	303, 469
BstHHI	GCGC	3 cut(s)	302, 396, 468
BstKTI	GATC	5 cut(s)	162, 678, 686, 720, 766
BstMAI	GTCTC	2 cut(s)	437, 594
BstMBI	GATC	5 cut(s)	159, 675, 683, 717, 763
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 128, 145, 297, 463, 737
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	159, 763
BstYI	RGATCY	2 cut(s)	159, 763
BsuRI	GGCC	5 cut(s)	41, 122, 223, 694, 731
BtgI	CCRYGG	2 cut(s)	303, 334
BtsCI	GGATG	5 cut(s)	292, 351, 481, 642, 757
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	298, 442, 883
BveI	ACCTGC	1 cut(s)	833
Cac8I	GCNNGC	2 cut(s)	442, 692
CfoI	GCGC	3 cut(s)	302, 396, 468
Cfr10I	RCCGGY	2 cut(s)	621, 736
Cfr13I	GGNCC	5 cut(s)	120, 121, 221, 485, 566
CpoI	CGGWCCG	1 cut(s)	485
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	228, 240, 815
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CspI	CGGWCCG	1 cut(s)	485
CviAII	CATG	4 cut(s)	304, 360, 641, 830
CviQI	GTAC	3 cut(s)	228, 240, 815
DdeI	CTNAG	2 cut(s)	379, 434
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	5 cut(s)	161, 677, 685, 719, 765
DpnII	GATC	5 cut(s)	159, 675, 683, 717, 763
EaeI	YGGCCR	3 cut(s)	39, 692, 729
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	485, 566
Eco47III	AGCGCT	1 cut(s)	467
EcoO109I	RGGNCCY	3 cut(s)	120, 121, 566
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	124
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	4 cut(s)	307, 363, 644, 833
FaiI	YATR	8 cut(s)	177, 213, 215, 255, 305, 361, 642, 831
FaqI	GGGAC	2 cut(s)	219, 763
FatI	CATG	4 cut(s)	303, 359, 640, 829
Fnu4HI	GCNGC	2 cut(s)	166, 458
FokI	GGATG	5 cut(s)	299, 338, 488, 649, 764
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	166, 458
GlaI	GCGC	3 cut(s)	301, 395, 467
GluI	GCNGC	2 cut(s)	166, 458
GsaI	CCCAGC	1 cut(s)	656
HaeII	RGCGCY	2 cut(s)	303, 469
HaeIII	GGCC	5 cut(s)	41, 122, 223, 694, 731
HapII	CCGG	6 cut(s)	42, 488, 574, 622, 695, 737
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	3 cut(s)	302, 396, 468
Hin1I	GRCGYC	2 cut(s)	300, 809
Hin1II	CATG	4 cut(s)	307, 363, 644, 833
Hin6I	GCGC	3 cut(s)	300, 394, 466
HinP1I	GCGC	3 cut(s)	300, 394, 466
HincII	GTYRAC	2 cut(s)	513, 883
HindII	GTYRAC	2 cut(s)	513, 883
HinfI	GANTC	2 cut(s)	23, 325
HpaII	CCGG	6 cut(s)	42, 488, 574, 622, 695, 737
HphI	GGTGA	3 cut(s)	18, 323, 857
Hpy166II	GTNNAC	2 cut(s)	513, 883
Hpy188I	TCNGA	6 cut(s)	186, 275, 485, 629, 675, 705
Hpy188III	TCNNGA	4 cut(s)	20, 502, 528, 593
Hpy8I	GTNNAC	2 cut(s)	513, 883
Hpy99I	CGWCG	2 cut(s)	811, 814
HpyAV	CCTTC	2 cut(s)	212, 304
HpyCH4III	ACNGT	2 cut(s)	335, 517
HpyCH4IV	ACGT	1 cut(s)	809
HpyCH4V	TGCA	4 cut(s)	131, 211, 640, 823
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 128, 145, 297, 463, 737
HpyF3I	CTNAG	2 cut(s)	379, 434
HpySE526I	ACGT	1 cut(s)	809
Hsp92I	GRCGYC	2 cut(s)	300, 809
Hsp92II	CATG	4 cut(s)	307, 363, 644, 833
HspAI	GCGC	3 cut(s)	300, 394, 466
KasI	GGCGCC	1 cut(s)	299
Kzo9I	GATC	5 cut(s)	159, 675, 683, 717, 763
LmnI	GCTCC	2 cut(s)	656, 859
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	2 cut(s)	118, 627
MaeII	ACGT	1 cut(s)	809
MaeIII	GTNAC	2 cut(s)	112, 343
MalI	GATC	5 cut(s)	161, 677, 685, 719, 765
MboI	GATC	5 cut(s)	159, 675, 683, 717, 763
MboII	GAAGA	4 cut(s)	63, 64, 82, 320
MflI	RGATCY	2 cut(s)	159, 763
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	731
MluNI	TGGCCA	1 cut(s)	731
Mly113I	GGCGCC	1 cut(s)	300
MmeI	TCCRAC	3 cut(s)	448, 463, 522
MnlI	CCTC	9 cut(s)	27, 56, 76, 271, 332, 407, 428, 540, 601
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	2 cut(s)	554, 888
MslI	CAYNNNNRTG	2 cut(s)	645, 890
Msp20I	TGGCCA	1 cut(s)	731
MspI	CCGG	6 cut(s)	42, 488, 574, 622, 695, 737
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	6 cut(s)	12, 128, 145, 297, 463, 737
NarI	GGCGCC	1 cut(s)	300
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	5 cut(s)	159, 675, 683, 717, 763
NlaIII	CATG	4 cut(s)	307, 363, 644, 833
NlaIV	GGNNCC	4 cut(s)	121, 122, 301, 567
NsiI	ATGCAT	1 cut(s)	642
PaqCI	CACCTGC	1 cut(s)	833
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	23, 325
PkrI	GCNGC	2 cut(s)	167, 459
PluTI	GGCGCC	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	566
PsiI	TTATAA	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	121, 122, 301, 567
PspOMI	GGGCCC	1 cut(s)	120
PspPI	GGNCC	5 cut(s)	120, 121, 221, 485, 566
PspPPI	RGGWCCY	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	159, 763
RsaI	GTAC	3 cut(s)	229, 241, 816
RsaNI	GTAC	3 cut(s)	228, 240, 815
RseI	CAYNNNNRTG	2 cut(s)	645, 890
Rsr2I	CGGWCCG	1 cut(s)	485
RsrII	CGGWCCG	1 cut(s)	485
SaqAI	TTAA	2 cut(s)	554, 888
SatI	GCNGC	2 cut(s)	166, 458
Sau3AI	GATC	5 cut(s)	159, 675, 683, 717, 763
Sau96I	GGNCC	5 cut(s)	120, 121, 221, 485, 566
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	39, 87, 247, 497, 812, 847, 894
SfaNI	GCATC	2 cut(s)	118, 627
SfoI	GGCGCC	1 cut(s)	301
SinI	GGWCC	2 cut(s)	485, 566
SmiMI	CAYNNNNRTG	2 cut(s)	645, 890
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SsiI	CCGC	2 cut(s)	163, 166
SspDI	GGCGCC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	335, 517
TaiI	ACGT	1 cut(s)	812
TaqI	TCGA	3 cut(s)	529, 716, 806
TatI	WGTACW	2 cut(s)	227, 239
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	23, 325
Tru1I	TTAA	2 cut(s)	554, 888
Tru9I	TTAA	2 cut(s)	554, 888
TscAI	CASTG	3 cut(s)	298, 442, 883
TseI	GCWGC	1 cut(s)	457
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	3 cut(s)	298, 442, 883
VpaK11BI	GGWCC	2 cut(s)	485, 566
ZraI	GACGTC	1 cut(s)	810
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.