Rroxscaffold_2G00124030

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013749
Physical Location & Seq
Reverse (-)
58092903 .. 58094088
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124030.1

Sequence Viewer

Length: 696 bp
ATGATGGATGCGGCCGGACGGGATATCTGGTTTGTGAGAGTATCTTTGGCTCGGAAGCTGCGGTCGGAGAGGGATTTCATTTGCCTCTCTCGGTGTACGGAGGCGGCTGCATCTGGGGTTGGGATCAGATCGGATTTGGATCCCGTGGTGTCTTGCGGCGGTTGGAGGGGAGGTCGGGCTCGATGGATAGTAGGATCGGATCGATGGGTTGACGGGTTGGTGGAGGGAAACGGAGCAGAGGCGGATCTTTGCCGGATCGGAGTGGGGATTGCTGGGCGGAATCACGACGGTGGATTGAGTGTAGCAGAGCCATTCCGGATTGGTGGATCGGGATCGCTGGTTGGTGGTGGGTTGGAGGAGGGCGGTCGTGCTGGCCTGTTTACTGGATTGGATTTTCGATCTGGATTTGGGCCATACTGGTTTGGGAGTTTGATGGGGTGTGGGATCCTTTGCTGTTGGTCCATCAACGGCGGGATGGCGTTGGTGGTGAGGGTCCGACCTTGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGACCAGCGGTAGCTTAGTTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAGGGGGCTTAGGGTGAAGGGACCAGTGAAGATGCCTACCAGGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTATGTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S10

Protein Analysis

231

Amino Acids

24.29

Weight (kDa)

8.99

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 190 - 227 1.4e-06 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 590
AccII CGCG 1 cut(s) 588
AccIII TCCGGA 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 502, 600
AjnI CCWGG 2 cut(s) 638, 659
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 4 cut(s) 58, 541, 548, 564
AluI AGCT 4 cut(s) 58, 541, 548, 564
Aor13HI TCCGGA 1 cut(s) 315
AoxI GGCC 3 cut(s) 12, 373, 410
ApeKI GCWGC 4 cut(s) 58, 107, 538, 541
AspS9I GGNCC 5 cut(s) 410, 459, 493, 552, 620
AsuHPI GGTGA 3 cut(s) 499, 625, 660
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 4 cut(s) 459, 493, 552, 620
BamHI GGATCC 2 cut(s) 139, 444
BanI GGYRCC 1 cut(s) 590
BanII GRGCYC 1 cut(s) 181
BbvI GCAGC 4 cut(s) 45, 94, 528, 550
BccI CCATC 5 cut(s) 177, 198, 427, 469, 470
BceAI ACGGC 1 cut(s) 484
BciT130I CCWGG 2 cut(s) 640, 661
BfaI CTAG 1 cut(s) 545
BisI GCNGC 9 cut(s) 12, 59, 105, 108, 157, 514, 517, 539, 542
BlsI GCNGC 9 cut(s) 13, 60, 106, 109, 158, 515, 518, 540, 543
Bme1390I CCNGG 2 cut(s) 640, 661
Bme18I GGWCC 4 cut(s) 459, 493, 552, 620
BmgT120I GGNCC 5 cut(s) 410, 459, 493, 552, 620
BmiI GGNNCC 5 cut(s) 141, 446, 494, 592, 621
BmrFI CCNGG 2 cut(s) 640, 661
BmsI GCATC 2 cut(s) 119, 621
BmtI GCTAGC 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 202
BsaBI GATNNNNATC 2 cut(s) 138, 331
BsaJI CCNNGG 4 cut(s) 144, 500, 594, 639
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 600
Bse1I ACTGG 3 cut(s) 388, 422, 623
Bse8I GATNNNNATC 2 cut(s) 138, 331
BseAI TCCGGA 1 cut(s) 315
BseBI CCWGG 2 cut(s) 640, 661
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 144, 500, 594, 639
BseGI GGATG 2 cut(s) 13, 480
BseJI GATNNNNATC 2 cut(s) 138, 331
BseLI CCNNNNNNNGG 2 cut(s) 502, 600
BseNI ACTGG 3 cut(s) 388, 422, 623
BseRI GAGGAG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 12
BseXI GCAGC 4 cut(s) 45, 94, 528, 550
BseYI CCCAGC 1 cut(s) 272
BsgI GTGCAG 2 cut(s) 557, 632
Bsh1236I CGCG 1 cut(s) 588
Bsh1285I CGRYCG 3 cut(s) 15, 65, 367
BshFI GGCC 3 cut(s) 14, 375, 412
BshNI GGYRCC 1 cut(s) 590
BshVI ATCGAT 1 cut(s) 202
BsiEI CGRYCG 3 cut(s) 15, 65, 367
BsiSI CCGG 3 cut(s) 15, 253, 316
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 2 cut(s) 502, 600
BsmFI GGGAC 1 cut(s) 633
BsnI GGCC 3 cut(s) 14, 375, 412
Bsp1286I GDGCHC 1 cut(s) 181
Bsp13I TCCGGA 1 cut(s) 315
BspANI GGCC 3 cut(s) 14, 375, 412
BspDI ATCGAT 1 cut(s) 202
BspEI TCCGGA 1 cut(s) 315
BspFNI CGCG 1 cut(s) 588
BspLI GGNNCC 5 cut(s) 141, 446, 494, 592, 621
BspOI GCTAGC 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 590
BsrI ACTGG 3 cut(s) 388, 422, 623
BssECI CCNNGG 4 cut(s) 144, 500, 594, 639
BssT1I CCWWGG 2 cut(s) 500, 594
Bst2UI CCWGG 2 cut(s) 640, 661
Bst4CI ACNGT 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 373, 546
BstDEI CTNAG 2 cut(s) 565, 608
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 13, 480
BstFNI CGCG 1 cut(s) 588
BstMCI CGRYCG 3 cut(s) 15, 65, 367
BstMWI GCNNNNNNNGC 1 cut(s) 522
BstNI CCWGG 2 cut(s) 640, 661
BstSCI CCNGG 2 cut(s) 638, 659
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 4 cut(s) 45, 94, 528, 550
BstX2I RGATCY 3 cut(s) 139, 244, 444
BstYI RGATCY 3 cut(s) 139, 244, 444
BstZI CGGCCG 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 3 cut(s) 14, 375, 412
BsuTUI ATCGAT 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 13, 480
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 373, 546
Cfr13I GGNCC 5 cut(s) 410, 459, 493, 552, 620
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 1 cut(s) 96
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 2 cut(s) 565, 608
DraIII CACNNNGTG 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 12
EagI CGGCCG 1 cut(s) 12
EciI GGCGGA 2 cut(s) 257, 292
EclXI CGGCCG 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 500, 594
Eco24I GRGCYC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 4 cut(s) 459, 493, 552, 620
Eco52I CGGCCG 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 638, 659
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 2 cut(s) 500, 594
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 500, 594
FaiI YATR 2 cut(s) 415, 686
FaqI GGGAC 1 cut(s) 633
FauI CCCGC 1 cut(s) 464
Fnu4HI GCNGC 9 cut(s) 12, 59, 105, 108, 157, 514, 517, 539, 542
FokI GGATG 2 cut(s) 20, 487
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 9 cut(s) 12, 59, 105, 108, 157, 514, 517, 539, 542
FspBI CTAG 1 cut(s) 545
GluI GCNGC 9 cut(s) 12, 59, 105, 108, 157, 514, 517, 539, 542
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 3 cut(s) 14, 375, 412
HapII CCGG 3 cut(s) 15, 253, 316
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 280
HpaII CCGG 3 cut(s) 15, 253, 316
HphI GGTGA 3 cut(s) 499, 625, 660
Hpy166II GTNNAC 3 cut(s) 96, 211, 381
Hpy188I TCNGA 7 cut(s) 54, 67, 128, 133, 199, 260, 497
Hpy188III TCNNGA 4 cut(s) 284, 316, 330, 402
Hpy8I GTNNAC 3 cut(s) 96, 211, 381
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 610, 674
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 3 cut(s) 110, 538, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 522
HpyF3I CTNAG 2 cut(s) 565, 608
Kpn2I TCCGGA 1 cut(s) 315
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 4 cut(s) 45, 94, 528, 550
LweI GCATC 2 cut(s) 119, 621
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 666
MboII GAAGA 1 cut(s) 640
MflI RGATCY 3 cut(s) 139, 244, 444
MhlI GDGCHC 1 cut(s) 181
MmeI TCCRAC 4 cut(s) 45, 143, 333, 520
MroI TCCGGA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 2 cut(s) 541, 558
MspI CCGG 3 cut(s) 15, 253, 316
MspR9I CCNGG 2 cut(s) 640, 661
MvaI CCWGG 2 cut(s) 640, 661
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 1 cut(s) 522
NheI GCTAGC 1 cut(s) 544
NlaIV GGNNCC 5 cut(s) 141, 446, 494, 592, 621
NmuCI GTSAC 1 cut(s) 666
OliI CACNNNNGTG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 280
PkrI GCNGC 9 cut(s) 13, 60, 106, 109, 158, 515, 518, 540, 543
Psp6I CCWGG 2 cut(s) 638, 659
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 638, 659
PspN4I GGNNCC 5 cut(s) 141, 446, 494, 592, 621
PspPI GGNCC 5 cut(s) 410, 459, 493, 552, 620
PsuI RGATCY 3 cut(s) 139, 244, 444
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 9 cut(s) 12, 59, 105, 108, 157, 514, 517, 539, 542
Sau96I GGNCC 5 cut(s) 410, 459, 493, 552, 620
ScrFI CCNGG 2 cut(s) 640, 661
SduI GDGCHC 1 cut(s) 181
SetI ASST 8 cut(s) 60, 175, 502, 537, 543, 550, 566, 685
SfaNI GCATC 2 cut(s) 119, 621
SinI GGWCC 4 cut(s) 459, 493, 552, 620
SmiMI CAYNNNNRTG 1 cut(s) 288
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 2 cut(s) 638, 659
StyI CCWWGG 2 cut(s) 500, 594
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 3 cut(s) 181, 202, 397
TauI GCSGC 5 cut(s) 14, 107, 159, 516, 519
TfiI GAWTC 1 cut(s) 280
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 1 cut(s) 666
TseI GCWGC 4 cut(s) 58, 107, 538, 541
Tsp45I GTSAC 1 cut(s) 666
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 2 cut(s) 113, 246
TspRI CASTG 1 cut(s) 630
VpaK11BI GGWCC 4 cut(s) 459, 493, 552, 620
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.