Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Forward (+)

44396647 .. 44397084

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG237600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTGTTGGGTAACTACCGGATCGTAGTGATGCCTTACGGTGGTCGGAGGACATGGCGGACTCGGTGGCTTGTGGGATCGGATTGCCGGATCGATGGTTTGGGGAGAGAAAGCGGTGTGGAGGCTGATTCTTGCCGGCTCGGAGTGTGGATGAATGGCGGTGGGCTGGGAGCGACAATACTTTTTCAGATCGGTGGATCTGGATACTTGTTTGGTGCTGGGTTGGAGGAGGTAGCTCGTGTTGGCCGGATTGTCAGATTGGATTTTCGAACTGATTTTTGGCCACACGGGCTTGGGGTTGGGATGGGATTTGGGATCTTTCACTGGTTTCCCGTAAGCGACAGGGTGGTGAGGGTCCGACGTCGGGACTCGTGCGATGGCGACGGCGGAGTGGTGCAGCTGCTAACATGGGCCGAGTGGGTTGGGTGTGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.93

Weight (kDa)

8.9

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	364
AciI	CCGC	5 cut(s)	58, 114, 159, 387, 432
AclWI	GGATC	5 cut(s)	29, 85, 98, 205, 323
AcoI	YGGCCR	2 cut(s)	244, 281
AcyI	GRCGYC	1 cut(s)	361
AfiI	CCNNNNNNNGG	2 cut(s)	41, 364
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	2 cut(s)	236, 400
AluI	AGCT	2 cut(s)	236, 400
AlwI	GGATC	5 cut(s)	29, 85, 98, 205, 323
AoxI	GGCC	3 cut(s)	244, 281, 411
ApeKI	GCWGC	2 cut(s)	397, 400
AspS9I	GGNCC	2 cut(s)	355, 411
AsuHPI	GGTGA	1 cut(s)	361
AsuII	TTCGAA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	283
BauI	CACGAG	2 cut(s)	237, 370
BbvI	GCAGC	2 cut(s)	387, 409
BccI	CCATC	3 cut(s)	89, 298, 371
BceAI	ACGGC	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	398, 401, 433
BlsI	GCNGC	3 cut(s)	399, 402, 434
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	355, 411
BmiI	GGNNCC	1 cut(s)	356
BmsI	GCATC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 364
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	93
BseGI	GGATG	2 cut(s)	156, 309
BseLI	CCNNNNNNNGG	2 cut(s)	41, 364
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	387, 409
BseYI	CCCAGC	2 cut(s)	166, 218
BsgI	GTGCAG	1 cut(s)	416
BshFI	GGCC	3 cut(s)	246, 283, 413
BshVI	ATCGAT	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	19, 88, 136, 247
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	41, 364
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	246, 283, 413
Bsp119I	TTCGAA	1 cut(s)	268
Bsp143I	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
BspACI	CCGC	5 cut(s)	58, 114, 159, 387, 432
BspANI	GGCC	3 cut(s)	246, 283, 413
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	5 cut(s)	29, 85, 98, 205, 323
BspT104I	TTCGAA	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	135
BssMI	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
BssNI	GRCGYC	1 cut(s)	361
BssSI	CACGAG	2 cut(s)	237, 370
Bst2BI	CACGAG	2 cut(s)	237, 370
Bst4CI	ACNGT	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	156, 309
BstKTI	GATC	6 cut(s)	24, 80, 93, 192, 200, 318
BstMBI	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	387, 409
BstX2I	RGATCY	2 cut(s)	197, 315
BstYI	RGATCY	2 cut(s)	197, 315
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	246, 283, 413
BsuTUI	ATCGAT	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	156, 309
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	355, 411
ClaI	ATCGAT	1 cut(s)	93
CviAII	CATG	2 cut(s)	54, 408
DpnI	GATC	6 cut(s)	23, 79, 92, 191, 199, 317
DpnII	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
EaeI	YGGCCR	2 cut(s)	244, 281
EciI	GGCGGA	2 cut(s)	73, 402
Eco47I	GGWCC	1 cut(s)	355
FaeI	CATG	2 cut(s)	57, 411
FaiI	YATR	2 cut(s)	55, 409
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	53, 407
Fnu4HI	GCNGC	3 cut(s)	398, 401, 433
FokI	GGATG	2 cut(s)	163, 316
Fsp4HI	GCNGC	3 cut(s)	398, 401, 433
FspBI	CTAG	1 cut(s)	436
GluI	GCNGC	3 cut(s)	398, 401, 433
GsaI	CCCAGC	2 cut(s)	170, 222
HaeIII	GGCC	3 cut(s)	246, 283, 413
HapII	CCGG	4 cut(s)	19, 88, 136, 247
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	57, 411
HinfI	GANTC	3 cut(s)	61, 128, 368
HpaII	CCGG	4 cut(s)	19, 88, 136, 247
HphI	GGTGA	1 cut(s)	361
Hpy188I	TCNGA	6 cut(s)	48, 82, 143, 189, 257, 359
Hpy188III	TCNNGA	2 cut(s)	201, 365
Hpy99I	CGWCG	3 cut(s)	363, 366, 386
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	361
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	57, 411
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	9 cut(s)	32, 101, 149, 152, 186, 204, 260, 310, 328
Lsp1109I	GCAGC	2 cut(s)	387, 409
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	436
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	6 cut(s)	23, 79, 92, 191, 199, 317
MboI	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
MflI	RGATCY	2 cut(s)	197, 315
MlsI	TGGCCA	1 cut(s)	283
MluNI	TGGCCA	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	55, 362
MmeI	TCCRAC	3 cut(s)	26, 204, 382
MnlI	CCTC	5 cut(s)	42, 115, 220, 223, 345
Mox20I	TGGCCA	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	283
Msp20I	TGGCCA	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	4 cut(s)	19, 88, 136, 247
MwoI	GCNNNNNNNGC	1 cut(s)	289
NaeI	GCCGGC	1 cut(s)	137
NdeII	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
NgoMIV	GCCGGC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	57, 411
NlaIV	GGNNCC	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	399, 402, 434
PleI	GAGTC	2 cut(s)	55, 362
PpsI	GAGTC	2 cut(s)	55, 362
PspFI	CCCAGC	2 cut(s)	166, 218
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	2 cut(s)	355, 411
PsuI	RGATCY	2 cut(s)	197, 315
PvuII	CAGCTG	1 cut(s)	400
SatI	GCNGC	3 cut(s)	398, 401, 433
Sau3AI	GATC	6 cut(s)	21, 77, 90, 189, 197, 315
Sau96I	GGNCC	2 cut(s)	355, 411
SchI	GAGTC	2 cut(s)	55, 362
SetI	ASST	4 cut(s)	234, 238, 364, 402
SfaNI	GCATC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	1 cut(s)	355
SsiI	CCGC	5 cut(s)	58, 114, 159, 387, 432
SspMI	CTAG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	93, 268
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	2 cut(s)	397, 400
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	355
XspI	CTAG	1 cut(s)	436
ZraI	GACGTC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.