Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001468.1

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Reverse (-)

60511 .. 62207

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001468.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgttttgtacagctttgtcctatgtgagtttgagattgctcggagaggagatggatggcggtgatggcgccatggagaaggcaagaaaatggattcttcaccgtggaggagttaccaccatcccatcatggggaaagatgtggctctcactgcgtctcagtgctagctctggtctttggccgcaccggcgcttgatggatgtggccggaccggatagttgtttcgtgagtgtgttgactgtattagtatctcgaaaactggggttggagagggttttaatggtgttgggtccctgccggatcgtagtgatgtctcacggtggttggaggacgtggtggactcggtggatagagggatcagattgctgggtcgacggaatggatgggatttgggatctttcgctggtgtccagtcggcgacagagtggtgagggtccgacgtcaggactcatgcgacgacatggcgtggtcagaggtgatggcgatttggagcatttgtggattgccagtgttgacattaaggtagcaatggagttgggtttagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

8.45

Isoelectric Point (pI)

43.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	60, 182
AclWI	GGATC	3 cut(s)	308, 364, 402
AcoI	YGGCCR	2 cut(s)	179, 204
AcyI	GRCGYC	2 cut(s)	69, 440
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 443
AjiI	CACGTC	1 cut(s)	333
AluBI	AGCT	2 cut(s)	14, 168
AluI	AGCT	2 cut(s)	14, 168
Alw26I	GTCTC	2 cut(s)	161, 318
AlwI	GGATC	3 cut(s)	308, 364, 402
AoxI	GGCC	2 cut(s)	179, 204
AspLEI	GCGC	2 cut(s)	71, 192
AspS9I	GGNCC	3 cut(s)	209, 290, 434
AsuHPI	GGTGA	4 cut(s)	74, 92, 440, 488
AsuNHI	GCTAGC	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	209, 290, 434
BanI	GGYRCC	1 cut(s)	68
BccI	CCATC	8 cut(s)	46, 50, 59, 128, 133, 190, 377, 473
BcoDI	GTCTC	2 cut(s)	161, 318
BfaI	CTAG	1 cut(s)	165
BfoI	RGCGCY	2 cut(s)	72, 193
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme18I	GGWCC	3 cut(s)	209, 290, 434
BmgBI	CACGTC	1 cut(s)	333
BmgT120I	GGNCC	3 cut(s)	209, 290, 434
BmiI	GGNNCC	4 cut(s)	70, 291, 292, 435
BmrI	ACTGGG	1 cut(s)	269
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	69, 440
BsaJI	CCNNGG	2 cut(s)	72, 103
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 443
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	3 cut(s)	264, 411, 507
Bse3DI	GCAATG	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	72, 103
BseGI	GGATG	4 cut(s)	61, 120, 205, 388
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 443
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	3 cut(s)	264, 411, 507
BseRI	GAGGAG	2 cut(s)	62, 123
BseYI	CCCAGC	1 cut(s)	366
BshFI	GGCC	2 cut(s)	181, 206
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	4 cut(s)	187, 207, 212, 298
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 443
BsmAI	GTCTC	2 cut(s)	161, 318
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	181, 206
Bsp1407I	TGTACA	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	300, 356, 394
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	60, 182
BspANI	GGCC	2 cut(s)	181, 206
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	4 cut(s)	70, 291, 292, 435
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	308, 364, 402
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	264, 411, 507
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	72, 103
BssMI	GATC	3 cut(s)	300, 356, 394
BssNI	GRCGYC	2 cut(s)	69, 440
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	104, 241, 320
BstACI	GRCGYC	2 cut(s)	69, 440
BstAUI	TGTACA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	2 cut(s)	72, 103
BstF5I	GGATG	4 cut(s)	61, 120, 205, 388
BstH2I	RGCGCY	2 cut(s)	72, 193
BstHHI	GCGC	2 cut(s)	71, 192
BstKTI	GATC	3 cut(s)	303, 359, 397
BstMAI	GTCTC	2 cut(s)	161, 318
BstMBI	GATC	3 cut(s)	300, 356, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 151, 187
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	181, 206
BtgI	CCRYGG	2 cut(s)	72, 103
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	61, 120, 205, 388
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	3 cut(s)	149, 166, 514
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	2 cut(s)	71, 192
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	209, 290, 434
CpoI	CGGWCCG	1 cut(s)	209
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	9
CspI	CGGWCCG	1 cut(s)	209
CviAII	CATG	4 cut(s)	73, 129, 451, 461
CviJI	RGCY	5 cut(s)	14, 145, 168, 181, 206
CviKI_1	RGCY	5 cut(s)	14, 145, 168, 181, 206
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	158
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	3 cut(s)	302, 358, 396
DpnII	GATC	3 cut(s)	300, 356, 394
EaeI	YGGCCR	2 cut(s)	179, 204
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	209, 290, 434
EcoO109I	RGGNCCY	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	72
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	4 cut(s)	76, 132, 454, 464
FaiI	YATR	5 cut(s)	24, 74, 130, 452, 462
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	4 cut(s)	72, 128, 450, 460
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	4 cut(s)	68, 107, 212, 395
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	2 cut(s)	70, 191
GluI	GCNGC	1 cut(s)	182
GsaI	CCCAGC	1 cut(s)	370
HaeII	RGCGCY	2 cut(s)	72, 193
HaeIII	GGCC	2 cut(s)	181, 206
HapII	CCGG	4 cut(s)	187, 207, 212, 298
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	71, 192
Hin1I	GRCGYC	2 cut(s)	69, 440
Hin1II	CATG	4 cut(s)	76, 132, 454, 464
Hin6I	GCGC	2 cut(s)	69, 190
HinP1I	GCGC	2 cut(s)	69, 190
HincII	GTYRAC	3 cut(s)	237, 373, 514
HindII	GTYRAC	3 cut(s)	237, 373, 514
HinfI	GANTC	3 cut(s)	94, 340, 447
HpaII	CCGG	4 cut(s)	187, 207, 212, 298
HphI	GGTGA	4 cut(s)	74, 92, 440, 488
Hpy166II	GTNNAC	4 cut(s)	237, 339, 373, 514
Hpy188I	TCNGA	4 cut(s)	44, 361, 438, 473
Hpy188III	TCNNGA	3 cut(s)	226, 252, 444
Hpy8I	GTNNAC	4 cut(s)	237, 339, 373, 514
Hpy99I	CGWCG	3 cut(s)	377, 442, 459
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	104, 241, 320
HpyCH4IV	ACGT	2 cut(s)	332, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 151, 187
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	332, 440
Hsp92I	GRCGYC	2 cut(s)	69, 440
Hsp92II	CATG	4 cut(s)	76, 132, 454, 464
HspAI	GCGC	2 cut(s)	69, 190
KasI	GGCGCC	1 cut(s)	68
KflI	GGGWCCC	1 cut(s)	290
Kzo9I	GATC	3 cut(s)	300, 356, 394
LmnI	GCTCC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	2 cut(s)	332, 440
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	3 cut(s)	302, 358, 396
MboI	GATC	3 cut(s)	300, 356, 394
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	394
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	334, 441
MmeI	TCCRAC	3 cut(s)	246, 305, 461
MnlI	CCTC	7 cut(s)	40, 101, 264, 321, 346, 424, 467
MseI	TTAA	2 cut(s)	278, 519
MspI	CCGG	4 cut(s)	187, 207, 212, 298
MwoI	GCNNNNNNNGC	3 cut(s)	66, 151, 187
NarI	GGCGCC	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	300, 356, 394
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	76, 132, 454, 464
NlaIV	GGNNCC	4 cut(s)	70, 291, 292, 435
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	2 cut(s)	334, 441
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	2 cut(s)	334, 441
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	366
PspN4I	GGNNCC	4 cut(s)	70, 291, 292, 435
PspPI	GGNCC	3 cut(s)	209, 290, 434
PspPPI	RGGWCCY	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	278, 519
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	3 cut(s)	300, 356, 394
Sau96I	GGNCC	3 cut(s)	209, 290, 434
SchI	GAGTC	2 cut(s)	334, 441
SetI	ASST	6 cut(s)	16, 170, 335, 443, 478, 525
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	186
SinI	GGWCC	3 cut(s)	209, 290, 434
SsiI	CCGC	2 cut(s)	60, 182
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	104, 241, 320
TaiI	ACGT	2 cut(s)	335, 443
TaqI	TCGA	2 cut(s)	253, 372
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	278, 519
Tru9I	TTAA	2 cut(s)	278, 519
TscAI	CASTG	3 cut(s)	156, 166, 514
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	3 cut(s)	156, 166, 514
VpaK11BI	GGWCC	3 cut(s)	209, 290, 434
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.