RLG00000007139

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013749
Physical Location & Seq
Reverse (-)
13882868 .. 13883588
721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007139

Sequence Viewer

Length: 525 bp
ATGGATGTGGCCGGACGAGATAGGTGTTTCGTGAGTGTGTTGATTGTATTCCTATATCGGAAACTGGGGTTGGAGAGGGATTCAATGGTGTTGGGTCCCTACCGGATCGTAGTGATGTCTTACGGTGGTCGGAGGACGTGGCGGACTCGGTGGATAGAGGGATCGTATTGCAGGGTCGATGGATTGGTGAGAGAAAGCGGAGTGGAGGCTGATTTTCGCTGGATCGGAGTGTGGATGCATGGCGGTGGGCTGGGAGCAACAGTACATTTTCAGATCGGTGGATCTGGATATTTGTTTGGTGGTGGGTTGGAGGAAGTAGATCGTGCTGGCCGGATTATCAGATTGGACTTTCGATCTAGTTTCTGGCCACACGGGCTTGGGGTTGGGATGGGATTTGGGATCTTTTGCTGGTGTCCCGTCGGCGACAGGGTGGTGAGGGTCCGACGTCGGAACTCGTGCGACGGTAGCAGTGGCATGGTGTACCTGCTAACATGGGCCGAGAAGGTTGGGTGCGCCGGCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.42

Weight (kDa)

9.41

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 492
AciI CCGC 3 cut(s) 142, 198, 243
AclWI GGATC 5 cut(s) 113, 169, 230, 289, 407
AcoI YGGCCR 3 cut(s) 9, 328, 365
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 2 cut(s) 264, 482
AgsI TTSAA 1 cut(s) 84
AjiI CACGTC 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AlwI GGATC 5 cut(s) 113, 169, 230, 289, 407
AoxI GGCC 5 cut(s) 9, 328, 365, 495, 517
AspLEI GCGC 1 cut(s) 515
AspS9I GGNCC 3 cut(s) 95, 439, 495
AsuHPI GGTGA 2 cut(s) 199, 445
AvaII GGWCC 2 cut(s) 95, 439
BalI TGGCCA 1 cut(s) 367
BauI CACGAG 1 cut(s) 454
BccI CCATC 2 cut(s) 173, 382
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 492
BglI GCCNNNNNGGC 1 cut(s) 373
Bme18I GGWCC 2 cut(s) 95, 439
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 95, 439, 495
BmiI GGNNCC 3 cut(s) 96, 97, 440
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 69
BseGI GGATG 3 cut(s) 10, 240, 393
BseNI ACTGG 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 5 cut(s) 11, 330, 367, 497, 519
BsiSI CCGG 4 cut(s) 12, 103, 331, 516
BslFI GGGAC 2 cut(s) 81, 399
BsmFI GGGAC 2 cut(s) 81, 399
BsnI GGCC 5 cut(s) 11, 330, 367, 497, 519
Bsp143I GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
BspACI CCGC 3 cut(s) 142, 198, 243
BspANI GGCC 5 cut(s) 11, 330, 367, 497, 519
BspLI GGNNCC 3 cut(s) 96, 97, 440
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 5 cut(s) 113, 169, 230, 289, 407
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 515
BssMI GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
BssNI GRCGYC 1 cut(s) 445
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst4CI ACNGT 3 cut(s) 125, 262, 464
BstACI GRCGYC 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 328, 517
BstF5I GGATG 3 cut(s) 10, 240, 393
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 8 cut(s) 108, 164, 225, 276, 284, 322, 356, 402
BstMBI GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
BstMWI GCNNNNNNNGC 2 cut(s) 373, 465
BstSFI CTRYAG 1 cut(s) 521
BstX2I RGATCY 2 cut(s) 281, 399
BstYI RGATCY 2 cut(s) 281, 399
BsuRI GGCC 5 cut(s) 11, 330, 367, 497, 519
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 3 cut(s) 10, 240, 393
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 475
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 328, 517
CfoI GCGC 1 cut(s) 515
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 3 cut(s) 95, 439, 495
Csp6I GTAC 2 cut(s) 263, 481
CviAII CATG 3 cut(s) 239, 475, 492
CviJI RGCY 8 cut(s) 11, 209, 250, 330, 367, 376, 497, 519
CviKI_1 RGCY 8 cut(s) 11, 209, 250, 330, 367, 376, 497, 519
CviQI GTAC 2 cut(s) 263, 481
DpnI GATC 8 cut(s) 107, 163, 224, 275, 283, 321, 355, 401
DpnII GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
EaeI YGGCCR 3 cut(s) 9, 328, 365
EciI GGCGGA 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 95, 439
EcoO109I RGGNCCY 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 240
FaeI CATG 3 cut(s) 242, 478, 495
FaiI YATR 5 cut(s) 55, 240, 476, 493, 523
FaqI GGGAC 2 cut(s) 81, 399
FatI CATG 3 cut(s) 238, 474, 491
FokI GGATG 3 cut(s) 17, 247, 400
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 514
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 5 cut(s) 11, 330, 367, 497, 519
HapII CCGG 4 cut(s) 12, 103, 331, 516
HhaI GCGC 1 cut(s) 515
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 3 cut(s) 242, 478, 495
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HinfI GANTC 2 cut(s) 80, 145
HpaII CCGG 4 cut(s) 12, 103, 331, 516
HphI GGTGA 2 cut(s) 199, 445
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 7 cut(s) 60, 132, 227, 273, 341, 443, 450
Hpy188III TCNNGA 2 cut(s) 31, 285
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 4 cut(s) 422, 447, 450, 464
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 125, 262, 464
HpyCH4IV ACGT 2 cut(s) 137, 445
HpyCH4V TGCA 2 cut(s) 171, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 373, 465
HpySE526I ACGT 2 cut(s) 137, 445
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 3 cut(s) 242, 478, 495
HspAI GCGC 1 cut(s) 513
KflI GGGWCCC 1 cut(s) 95
KroI GCCGGC 1 cut(s) 515
KroNI GCCGGC 1 cut(s) 517
Kzo9I GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
LmnI GCTCC 1 cut(s) 254
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 357
MaeII ACGT 2 cut(s) 137, 445
MalI GATC 8 cut(s) 107, 163, 224, 275, 283, 321, 355, 401
MboI GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
MflI RGATCY 2 cut(s) 281, 399
MlsI TGGCCA 1 cut(s) 367
MluNI TGGCCA 1 cut(s) 367
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 5 cut(s) 51, 110, 288, 428, 466
MnlI CCTC 6 cut(s) 69, 126, 151, 199, 304, 429
Mox20I TGGCCA 1 cut(s) 367
Mph1103I ATGCAT 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 515
MscI TGGCCA 1 cut(s) 367
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 367
MspI CCGG 4 cut(s) 12, 103, 331, 516
MwoI GCNNNNNNNGC 2 cut(s) 373, 465
NaeI GCCGGC 1 cut(s) 517
NdeII GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
NgoMIV GCCGGC 1 cut(s) 515
NlaIII CATG 3 cut(s) 242, 478, 495
NlaIV GGNNCC 3 cut(s) 96, 97, 440
NmeAIII GCCGAG 1 cut(s) 523
NsiI ATGCAT 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 517
PfeI GAWTC 1 cut(s) 80
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 96, 97, 440
PspPI GGNCC 3 cut(s) 95, 439, 495
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 2 cut(s) 281, 399
RsaI GTAC 2 cut(s) 264, 482
RsaNI GTAC 2 cut(s) 263, 481
RseI CAYNNNNRTG 1 cut(s) 243
Sau3AI GATC 8 cut(s) 105, 161, 222, 273, 281, 319, 353, 399
Sau96I GGNCC 3 cut(s) 95, 439, 495
SchI GAGTC 1 cut(s) 139
SetI ASST 5 cut(s) 26, 140, 448, 486, 507
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 2 cut(s) 95, 439
SmiMI CAYNNNNRTG 1 cut(s) 243
SsiI CCGC 3 cut(s) 142, 198, 243
SspMI CTAG 1 cut(s) 357
TaaI ACNGT 3 cut(s) 125, 262, 464
TaiI ACGT 2 cut(s) 140, 448
TaqI TCGA 2 cut(s) 177, 352
TatI WGTACW 1 cut(s) 262
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 475
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 95, 439
XspI CTAG 1 cut(s) 357
ZraI GACGTC 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.