Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00923

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Reverse (-)

6995 .. 8214

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTGGGGTGTAGCAGAGCCATTCCGGATTGGTGGATCGGGATCGCTGGTTGGTGGTGGGTTGGAGGAGGGCGGTCGTGCTGGCCTGTTTACTGGATTGGATTTTCGATCTGGATTTGGGCCATACTGGTTTGGGAGTTTGATGGGGTGTGGGATCCTTCGCTGTTGGTCCATCAGCGGCGGGATGGCGTTGGTGGTGAGGGTCCGACCTTGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGACCGGCGGTAGCTTAGGTTTCTTAGAACGTCAAGAACATCGAGAAAGGAGGCTCAGGGTGAAGGGACCAGTGAAGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGCGTGGGCATAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

155

Amino Acids

16.8

Weight (kDa)

9.44

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	105 - 151	3.3e-13	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	7 cut(s)	75, 180, 183, 225, 228, 231, 270
AclWI	GGATC	4 cut(s)	46, 52, 151, 164
AcuI	CTGAAG	1 cut(s)	433
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	2 cut(s)	214, 402
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	4 cut(s)	253, 260, 276, 453
AluI	AGCT	4 cut(s)	253, 260, 276, 453
AlwI	GGATC	4 cut(s)	46, 52, 151, 164
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	2 cut(s)	85, 122
ApeKI	GCWGC	2 cut(s)	250, 253
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	5 cut(s)	122, 171, 205, 264, 329
AsuHPI	GGTGA	3 cut(s)	211, 334, 369
AsuNHI	GCTAGC	1 cut(s)	256
AvaII	GGWCC	4 cut(s)	171, 205, 264, 329
BamHI	GGATCC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	240, 262
BccI	CCATC	3 cut(s)	139, 181, 182
BciT130I	CCWGG	1 cut(s)	370
BfaI	CTAG	1 cut(s)	257
BisI	GCNGC	5 cut(s)	181, 226, 229, 251, 254
BlsI	GCNGC	5 cut(s)	182, 227, 230, 252, 255
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	4 cut(s)	171, 205, 264, 329
BmgT120I	GGNCC	5 cut(s)	122, 171, 205, 264, 329
BmiI	GGNNCC	4 cut(s)	158, 206, 330, 394
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	330
BmtI	GCTAGC	1 cut(s)	260
Bpu10I	CCTNAGC	2 cut(s)	277, 317
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	212, 348
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 402
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	3 cut(s)	100, 134, 332
Bse8I	GATNNNNATC	1 cut(s)	43
BseAI	TCCGGA	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	212, 348
BseGI	GGATG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	214, 402
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	3 cut(s)	100, 134, 332
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	2 cut(s)	240, 262
BsgI	GTGCAG	2 cut(s)	269, 341
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	87, 124
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	28, 267
BslFI	GGGAC	2 cut(s)	342, 419
BslI	CCNNNNNNNGG	2 cut(s)	214, 402
BsmFI	GGGAC	2 cut(s)	342, 419
BsnI	GGCC	2 cut(s)	87, 124
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	5 cut(s)	38, 44, 110, 156, 442
BspACI	CCGC	7 cut(s)	75, 180, 183, 225, 228, 231, 270
BspANI	GGCC	2 cut(s)	87, 124
BspCNI	CTCAG	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	158, 206, 330, 394
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	4 cut(s)	46, 52, 151, 164
BspT107I	GGYRCC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	100, 134, 332
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	212, 348
BssMI	GATC	5 cut(s)	38, 44, 110, 156, 442
BssT1I	CCWWGG	2 cut(s)	212, 348
Bst2UI	CCWGG	1 cut(s)	370
Bst6I	CTCTTC	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	85, 258
BstDEI	CTNAG	3 cut(s)	277, 286, 317
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	5 cut(s)	41, 47, 113, 159, 445
BstMBI	GATC	5 cut(s)	38, 44, 110, 156, 442
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	240, 262
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	87, 124
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	85, 258
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	5 cut(s)	122, 171, 205, 264, 329
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	1 cut(s)	402
CviJI	RGCY	9 cut(s)	22, 87, 124, 237, 253, 260, 276, 316, 453
CviKI_1	RGCY	9 cut(s)	22, 87, 124, 237, 253, 260, 276, 316, 453
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	3 cut(s)	277, 286, 317
DpnI	GATC	5 cut(s)	40, 46, 112, 158, 444
DpnII	GATC	5 cut(s)	38, 44, 110, 156, 442
DraIII	CACNNNGTG	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	212, 348
Eco47I	GGWCC	4 cut(s)	171, 205, 264, 329
Eco57I	CTGAAG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	2 cut(s)	212, 348
ErhI	CCWWGG	2 cut(s)	212, 348
FaeI	CATG	1 cut(s)	405
FaiI	YATR	3 cut(s)	127, 403, 429
FaqI	GGGAC	2 cut(s)	342, 419
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	5 cut(s)	181, 226, 229, 251, 254
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	181, 226, 229, 251, 254
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	5 cut(s)	181, 226, 229, 251, 254
HaeIII	GGCC	2 cut(s)	87, 124
HapII	CCGG	2 cut(s)	28, 267
Hin1II	CATG	1 cut(s)	405
HpaII	CCGG	2 cut(s)	28, 267
HphI	GGTGA	3 cut(s)	211, 334, 369
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	6 cut(s)	28, 42, 114, 296, 305, 458
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	170, 319, 383
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	250, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	3 cut(s)	277, 286, 317
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	405
Kpn2I	TCCGGA	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	5 cut(s)	38, 44, 110, 156, 442
Lsp1109I	GCAGC	2 cut(s)	240, 262
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	5 cut(s)	40, 46, 112, 158, 444
MboI	GATC	5 cut(s)	38, 44, 110, 156, 442
MboII	GAAGA	2 cut(s)	349, 439
MflI	RGATCY	1 cut(s)	156
MmeI	TCCRAC	2 cut(s)	45, 232
MnlI	CCTC	5 cut(s)	61, 64, 195, 238, 306
MroI	TCCGGA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	2 cut(s)	180, 253
MspI	CCGG	2 cut(s)	28, 267
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	5 cut(s)	38, 44, 110, 156, 442
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	4 cut(s)	158, 206, 330, 394
NmuCI	GTSAC	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	182, 227, 230, 252, 255
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	4 cut(s)	158, 206, 330, 394
PspPI	GGNCC	5 cut(s)	122, 171, 205, 264, 329
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	432
SatI	GCNGC	5 cut(s)	181, 226, 229, 251, 254
Sau3AI	GATC	5 cut(s)	38, 44, 110, 156, 442
Sau96I	GGNCC	5 cut(s)	122, 171, 205, 264, 329
ScrFI	CCNGG	1 cut(s)	370
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	4 cut(s)	171, 205, 264, 329
SmiMI	CAYNNNNRTG	1 cut(s)	432
SsiI	CCGC	7 cut(s)	75, 180, 183, 225, 228, 231, 270
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	212, 348
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	109, 304
TauI	GCSGC	3 cut(s)	183, 228, 231
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	2 cut(s)	250, 253
Tsp45I	GTSAC	1 cut(s)	375
TspRI	CASTG	1 cut(s)	339
Van91I	CCANNNNNTGG	1 cut(s)	402
VpaK11BI	GGWCC	4 cut(s)	171, 205, 264, 329
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.