Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Reverse (-)

15813838 .. 15815700

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGATGGATGCGGGTGGACGGGATATCTGGTTTGTGAGAGTATCTTTGGCTCGGAAGCTGCGGTCGGAGAGGGATTTCATTTGCCTCTCTCGGTGTACGGAGGCGGCTGCATCTGGGGTTGGGATCAGATCGGATTTGGATCCCGTGGTGTCTTGCGGCGGTTGGAGGGGAGGTCGGGCTCGATGGATAGTAGGATCGGATCGATGGGTTGACGGGTTGGTGGAGGGAAACGGAGCGGAGGCGGATCTTTGCCGGATCGGAGTGGGGATTGCTGGGCGGAATCACGACGGTGGATTGGGTGTAGCAGAGCCATTCCGGATTGGTGGATCGGGATCGCTGGTTGGTGGTGGGTTGGAGGAGGGCGGTCGTGCTGGCCTGTTCACTGGATTGGATTTTCGATCTGGATTTAGGCCATACTGGTTTGGGAGTTTGATGGGGTGTGGGATCCTTCGCTGTTGGTCCATCAGCGGCGGGATGGCGTTGGTTGTGAGGGTCCGACCTTGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGACCGGCGGTAGCTTAGGTTTCTTAGAACGTCAAGAACATCGAGAAAGTACTATTTGTGCTGATTTGGTTCGCGGTGCCAAGGACAGGAGGCTCAGGGTGAAGGGACCAGTGAAGATGCCTACCAAGGTTCTGCACATTACCACCAGGAAGTCACCCTGTGGAGAAGGTACCAACACATGGGACAGATTTGAGTTGCGTGGGCATAAGCGTGTTATTGATCTCTTCAGCTCTCCTGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko03010 map00520 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_S10

Protein Analysis

264

Amino Acids

28.37

Weight (kDa)

9.29

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S10	PF00338	202 - 260	4.7e-15	Ribosomal protein S10p/S20e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	719
AccB1I	GGYRCC	2 cut(s)	626, 719
AccB7I	CCANNNNNTGG	1 cut(s)	729
AccBSI	CCGCTC	1 cut(s)	236
AccII	CGCG	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	760
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	3 cut(s)	97, 601, 721
AfiI	CCNNNNNNNGG	3 cut(s)	502, 636, 729
AjnI	CCWGG	1 cut(s)	695
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	5 cut(s)	58, 541, 548, 564, 780
AluI	AGCT	5 cut(s)	58, 541, 548, 564, 780
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	373, 410
ApeKI	GCWGC	4 cut(s)	58, 107, 538, 541
Asp718I	GGTACC	1 cut(s)	719
AspS9I	GGNCC	4 cut(s)	459, 493, 552, 656
AsuHPI	GGTGA	2 cut(s)	661, 696
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	4 cut(s)	459, 493, 552, 656
BamHI	GGATCC	2 cut(s)	139, 444
BanI	GGYRCC	2 cut(s)	626, 719
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	45, 94, 528, 550
BccI	CCATC	5 cut(s)	177, 198, 427, 469, 470
BciT130I	CCWGG	1 cut(s)	697
BfaI	CTAG	1 cut(s)	545
BisI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
BlsI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	1 cut(s)	697
Bme18I	GGWCC	4 cut(s)	459, 493, 552, 656
BmgT120I	GGNCC	4 cut(s)	459, 493, 552, 656
BmiI	GGNNCC	6 cut(s)	141, 446, 494, 628, 657, 721
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	2 cut(s)	119, 657
BmtI	GCTAGC	1 cut(s)	548
Bpu10I	CCTNAGC	2 cut(s)	565, 644
Bsa29I	ATCGAT	1 cut(s)	202
BsaBI	GATNNNNATC	2 cut(s)	138, 331
BsaJI	CCNNGG	4 cut(s)	144, 500, 630, 675
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 636, 729
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	388, 422, 659
Bse8I	GATNNNNATC	2 cut(s)	138, 331
BseAI	TCCGGA	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	697
BseCI	ATCGAT	1 cut(s)	202
BseDI	CCNNGG	4 cut(s)	144, 500, 630, 675
BseGI	GGATG	2 cut(s)	13, 480
BseJI	GATNNNNATC	2 cut(s)	138, 331
BseLI	CCNNNNNNNGG	3 cut(s)	502, 636, 729
BseMII	CTCAG	1 cut(s)	658
BseNI	ACTGG	3 cut(s)	388, 422, 659
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	45, 94, 528, 550
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	2 cut(s)	557, 668
Bsh1236I	CGCG	1 cut(s)	624
Bsh1285I	CGRYCG	2 cut(s)	65, 367
BshFI	GGCC	2 cut(s)	375, 412
BshNI	GGYRCC	2 cut(s)	626, 719
BshVI	ATCGAT	1 cut(s)	202
BsiEI	CGRYCG	2 cut(s)	65, 367
BsiSI	CCGG	3 cut(s)	253, 316, 555
BslFI	GGGAC	2 cut(s)	669, 746
BslI	CCNNNNNNNGG	3 cut(s)	502, 636, 729
BsmFI	GGGAC	2 cut(s)	669, 746
BsnI	GGCC	2 cut(s)	375, 412
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	315
BspANI	GGCC	2 cut(s)	375, 412
BspCNI	CTCAG	1 cut(s)	657
BspDI	ATCGAT	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	6 cut(s)	141, 446, 494, 628, 657, 721
BspOI	GCTAGC	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	626, 719
BsrBI	CCGCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	388, 422, 659
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	4 cut(s)	144, 500, 630, 675
BssT1I	CCWWGG	3 cut(s)	500, 630, 675
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	373, 546
BstDEI	CTNAG	3 cut(s)	565, 574, 644
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	13, 480
BstFNI	CGCG	1 cut(s)	624
BstMCI	CGRYCG	2 cut(s)	65, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	522
BstNI	CCWGG	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	695
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	4 cut(s)	45, 94, 528, 550
BstX2I	RGATCY	3 cut(s)	139, 244, 444
BstYI	RGATCY	3 cut(s)	139, 244, 444
Bsu15I	ATCGAT	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	375, 412
BsuTUI	ATCGAT	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	13, 480
BtsIMutI	CAGTG	2 cut(s)	381, 666
Cac8I	GCNNGC	2 cut(s)	373, 546
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	4 cut(s)	459, 493, 552, 656
ClaI	ATCGAT	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	96, 600, 720
CviAII	CATG	1 cut(s)	729
CviQI	GTAC	3 cut(s)	96, 600, 720
DdeI	CTNAG	3 cut(s)	565, 574, 644
DraIII	CACNNNGTG	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
EciI	GGCGGA	2 cut(s)	257, 292
Eco130I	CCWWGG	3 cut(s)	500, 630, 675
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	4 cut(s)	459, 493, 552, 656
Eco57I	CTGAAG	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	695
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	3 cut(s)	500, 630, 675
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	3 cut(s)	500, 630, 675
FaeI	CATG	1 cut(s)	732
FaiI	YATR	3 cut(s)	415, 730, 756
FaqI	GGGAC	2 cut(s)	669, 746
FatI	CATG	1 cut(s)	728
FauI	CCCGC	2 cut(s)	4, 464
Fnu4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FokI	GGATG	2 cut(s)	20, 487
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
GsaI	CCCAGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	375, 412
HapII	CCGG	3 cut(s)	253, 316, 555
Hin1II	CATG	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	3 cut(s)	253, 316, 555
HphI	GGTGA	2 cut(s)	661, 696
Hpy166II	GTNNAC	4 cut(s)	17, 96, 211, 381
Hpy188I	TCNGA	7 cut(s)	54, 67, 128, 133, 199, 260, 497
Hpy188III	TCNNGA	7 cut(s)	284, 316, 330, 402, 584, 593, 785
Hpy8I	GTNNAC	4 cut(s)	17, 96, 211, 381
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	458, 646, 710
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	3 cut(s)	110, 538, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	522
HpyF3I	CTNAG	3 cut(s)	565, 574, 644
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	732
Kpn2I	TCCGGA	1 cut(s)	315
KpnI	GGTACC	1 cut(s)	723
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	4 cut(s)	45, 94, 528, 550
LweI	GCATC	2 cut(s)	119, 657
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	1 cut(s)	702
MbiI	CCGCTC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	676, 766
MflI	RGATCY	3 cut(s)	139, 244, 444
MhlI	GDGCHC	1 cut(s)	181
MmeI	TCCRAC	4 cut(s)	45, 143, 333, 520
MroI	TCCGGA	1 cut(s)	315
MslI	CAYNNNNRTG	2 cut(s)	288, 759
MspA1I	CMGCKG	2 cut(s)	468, 541
MspI	CCGG	3 cut(s)	253, 316, 555
MspR9I	CCNGG	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	697
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	1 cut(s)	522
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	1 cut(s)	732
NlaIV	GGNNCC	6 cut(s)	141, 446, 494, 628, 657, 721
NmuCI	GTSAC	1 cut(s)	702
OliI	CACNNNNGTG	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	729
PkrI	GCNGC	9 cut(s)	60, 106, 109, 158, 470, 515, 518, 540, 543
Psp6I	CCWGG	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	6 cut(s)	141, 446, 494, 628, 657, 721
PspPI	GGNCC	4 cut(s)	459, 493, 552, 656
PsuI	RGATCY	3 cut(s)	139, 244, 444
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	3 cut(s)	97, 601, 721
RsaNI	GTAC	3 cut(s)	96, 600, 720
RseI	CAYNNNNRTG	2 cut(s)	288, 759
SatI	GCNGC	9 cut(s)	59, 105, 108, 157, 469, 514, 517, 539, 542
Sau96I	GGNCC	4 cut(s)	459, 493, 552, 656
ScaI	AGTACT	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	2 cut(s)	119, 657
SinI	GGWCC	4 cut(s)	459, 493, 552, 656
SmiMI	CAYNNNNRTG	2 cut(s)	288, 759
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	3 cut(s)	500, 630, 675
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	4 cut(s)	181, 202, 397, 592
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	5 cut(s)	107, 159, 471, 516, 519
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	2 cut(s)	388, 666
TseFI	GTSAC	1 cut(s)	702
TseI	GCWGC	4 cut(s)	58, 107, 538, 541
Tsp45I	GTSAC	1 cut(s)	702
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	2 cut(s)	113, 246
TspRI	CASTG	2 cut(s)	388, 666
Van91I	CCANNNNNTGG	1 cut(s)	729
VpaK11BI	GGWCC	4 cut(s)	459, 493, 552, 656
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.