Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Reverse (-)

30895031 .. 30895420

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG189500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGAGATCGGGATCTTTCCTCCTTAGATCTGATCGTGGACGACGAGTGGGATTTAATGATGATGTTTTACGGTGGCCGGAGGATGGGGCGGACTCGAAAGAGGGATCGAATCACTGGGTCAGTGGATTGGTGGGAGAAAGCGGAGTGGAAGCTGATTTTCGCCGGATCAGAGTGTGGATGCATGGCCGTGGATTGGGAGCAACAGTACAATTTCAGATCGGTAGATCCAGATATTTGTTTGGTGGTGGGTTAGAGGAAGAAGATCGTGCTGGCCGGATTATCAGATTGGACTTTCGATATGGTCTCTGGCCACGTGGACTTGGGGCTGGGATGAGATTTGAGACCTTTCGCTGGTGTCTCGTCGGCGACAGGGTGGTGAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

10.54

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	92, 144
AclWI	GGATC	4 cut(s)	22, 115, 176, 222
AcoI	YGGCCR	4 cut(s)	77, 187, 274, 311
AcvI	CACGTG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	86, 196, 354
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	3 cut(s)	311, 338, 365
AlwI	GGATC	4 cut(s)	22, 115, 176, 222
AoxI	GGCC	4 cut(s)	77, 187, 274, 311
BalI	TGGCCA	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	317
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	311, 338, 365
BglII	AGATCT	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	13
BsaI	GGTCTC	2 cut(s)	311, 338
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 196, 354
Bse1I	ACTGG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	3 cut(s)	91, 186, 339
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	86, 196, 354
BseNI	ACTGG	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	4 cut(s)	79, 189, 276, 313
BsiSI	CCGG	3 cut(s)	80, 166, 277
BslI	CCNNNNNNNGG	3 cut(s)	86, 196, 354
BsmAI	GTCTC	3 cut(s)	311, 338, 365
BsnI	GGCC	4 cut(s)	79, 189, 276, 313
Bso31I	GGTCTC	2 cut(s)	311, 338
Bsp143I	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
BspACI	CCGC	2 cut(s)	92, 144
BspANI	GGCC	4 cut(s)	79, 189, 276, 313
BspPI	GGATC	4 cut(s)	22, 115, 176, 222
BspTNI	GGTCTC	2 cut(s)	311, 338
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
Bst4CI	ACNGT	2 cut(s)	75, 208
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	3 cut(s)	91, 186, 339
BstKTI	GATC	9 cut(s)	11, 17, 32, 37, 110, 171, 222, 230, 268
BstMAI	GTCTC	3 cut(s)	311, 338, 365
BstMBI	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
BstX2I	RGATCY	3 cut(s)	14, 29, 227
BstYI	RGATCY	3 cut(s)	14, 29, 227
BsuRI	GGCC	4 cut(s)	79, 189, 276, 313
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	91, 186, 339
BtsIMutI	CAGTG	2 cut(s)	115, 130
Cac8I	GCNNGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	6 cut(s)	79, 155, 189, 276, 313, 329
CviKI_1	RGCY	6 cut(s)	79, 155, 189, 276, 313, 329
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	9 cut(s)	10, 16, 31, 36, 109, 170, 221, 229, 267
DpnII	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
EaeI	YGGCCR	4 cut(s)	77, 187, 274, 311
EciI	GGCGGA	1 cut(s)	107
Eco31I	GGTCTC	2 cut(s)	311, 338
Eco72I	CACGTG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	186
FaeI	CATG	1 cut(s)	188
FaiI	YATR	2 cut(s)	186, 303
FatI	CATG	1 cut(s)	184
FokI	GGATG	3 cut(s)	98, 193, 346
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	4 cut(s)	79, 189, 276, 313
HapII	CCGG	3 cut(s)	80, 166, 277
Hin1II	CATG	1 cut(s)	188
HinfI	GANTC	2 cut(s)	95, 112
HpaII	CCGG	3 cut(s)	80, 166, 277
Hpy166II	GTNNAC	2 cut(s)	41, 320
Hpy188I	TCNGA	5 cut(s)	34, 173, 219, 287, 389
Hpy188III	TCNNGA	2 cut(s)	12, 231
Hpy8I	GTNNAC	2 cut(s)	41, 320
Hpy99I	CGWCG	2 cut(s)	48, 368
HpyCH4III	ACNGT	2 cut(s)	75, 208
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
LmnI	GCTCC	1 cut(s)	200
LweI	GCATC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	316
MalI	GATC	9 cut(s)	10, 16, 31, 36, 109, 170, 221, 229, 267
MboI	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
MboII	GAAGA	2 cut(s)	272, 275
MflI	RGATCY	3 cut(s)	14, 29, 227
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	212
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	32, 76, 97, 250, 375
Mox20I	TGGCCA	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	313
MspI	CCGG	3 cut(s)	80, 166, 277
NdeII	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
NlaIII	CATG	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	89
PmaCI	CACGTG	1 cut(s)	317
PmlI	CACGTG	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	317
PspCI	CACGTG	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	329
PsuI	RGATCY	3 cut(s)	14, 29, 227
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	9 cut(s)	8, 14, 29, 34, 107, 168, 219, 227, 265
SchI	GAGTC	1 cut(s)	89
SetI	ASST	3 cut(s)	157, 319, 350
SfaNI	GCATC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	92, 144
TaaI	ACNGT	2 cut(s)	75, 208
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	98, 110, 298
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	122, 130
TspRI	CASTG	2 cut(s)	122, 130
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.