Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013749

Physical Location & Seq

Genomic Coordinates Forward (+)

52145863 .. 52146921

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG368600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATAGATGCGGGTGGACGGGATATCTGGTTTGTGAGAGTATCTTTGGCTCGGAAGCTGCGGTCGGAGAGGGATTTCATTTGCCTCTCTCGGTGTACGGAGGCGGCTGCATCTGGGGTTGGGATCAGATCGGATTTGGATCCCGTGGTGTCTTGCCGAGGTCGGGCTCGATGGATAGTAGGATCGGATCGATGGGTTGACGGGTTGGTGGAGGGAAACGGAGCGGAGGCGGATCTTTGCCGGATCGGAGTGGGGATTGCTGGGCGGAATCACGACGGTGGATTGGGTGTAGCAGAGCCATTCCGGATTGGTGGATCGGGATCGCTGGTTGGTGATGGGTTGGAGGAGGGCGGTCGTGCTGGCCTGTTTACTGGATTGGATTTTCGATCTGGATTTGGGCCATACTGGTTTGGGAGTTTGATGGGGTGTGGGATCCTTCGCTGTTGGTCCATCAGCGGCGGGATGACGTTGGTGGTGAGGGTCCGACCTTGGGGGAACTGCGGCGGCGGTGGCTGTGGCGAGGTGCAGCTGCTAGCTTGGGCCGGCGGTAGCTTAGGTTTCTTAGAACGTCAAGAACATCGAGAAAGTTTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

20.92

Weight (kDa)

6.72

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318001 RchiOBHm_Chr1g0324841 RchiOBHm_Chr5g0021671
rosa_laevigata	RLG00000007139
rosa_multiflora	Rmu_sc0001468.1_g000013 Rmu_sc0001548.1_g000011 Rmu_sc0001898.1_g000019 Rmu_sc0003929.1_g000003 Rmu_sc0006323.1_g000030
rosa_roxburghii	Rroxscaffold_2G00124030
rosa_samantha	Rh1DG093700 Rh2AG457300 Rh2CG292400 Rh2CG444700 Rh2DG368600 Rh6BG237600 Rh6CG189500
rosa_wichuraiana	Rw0G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	303
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	163, 490
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	4 cut(s)	58, 529, 536, 552
AluI	AGCT	4 cut(s)	58, 529, 536, 552
Aor13HI	TCCGGA	1 cut(s)	303
AoxI	GGCC	3 cut(s)	361, 398, 540
ApeKI	GCWGC	4 cut(s)	58, 107, 526, 529
AspS9I	GGNCC	4 cut(s)	398, 447, 481, 540
AsuHPI	GGTGA	2 cut(s)	344, 487
AsuNHI	GCTAGC	1 cut(s)	532
AvaII	GGWCC	2 cut(s)	447, 481
BamHI	GGATCC	2 cut(s)	139, 432
BanII	GRGCYC	1 cut(s)	169
BbvI	GCAGC	4 cut(s)	45, 94, 516, 538
BccI	CCATC	5 cut(s)	165, 186, 329, 415, 458
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	8 cut(s)	59, 105, 108, 457, 502, 505, 527, 530
BlsI	GCNGC	8 cut(s)	60, 106, 109, 458, 503, 506, 528, 531
Bme18I	GGWCC	2 cut(s)	447, 481
BmgT120I	GGNCC	4 cut(s)	398, 447, 481, 540
BmiI	GGNNCC	3 cut(s)	141, 434, 482
BmsI	GCATC	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	190
BsaBI	GATNNNNATC	2 cut(s)	138, 319
BsaJI	CCNNGG	3 cut(s)	144, 157, 488
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 490
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	376, 410
Bse8I	GATNNNNATC	2 cut(s)	138, 319
BseAI	TCCGGA	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	144, 157, 488
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	2 cut(s)	138, 319
BseLI	CCNNNNNNNGG	2 cut(s)	163, 490
BseNI	ACTGG	2 cut(s)	376, 410
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	4 cut(s)	45, 94, 516, 538
BseYI	CCCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	545
Bsh1285I	CGRYCG	2 cut(s)	65, 355
BshFI	GGCC	3 cut(s)	363, 400, 542
BshVI	ATCGAT	1 cut(s)	190
BsiEI	CGRYCG	2 cut(s)	65, 355
BsiSI	CCGG	3 cut(s)	241, 304, 543
BslI	CCNNNNNNNGG	2 cut(s)	163, 490
BsnI	GGCC	3 cut(s)	363, 400, 542
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	303
BspANI	GGCC	3 cut(s)	363, 400, 542
BspDI	ATCGAT	1 cut(s)	190
BspEI	TCCGGA	1 cut(s)	303
BspLI	GGNNCC	3 cut(s)	141, 434, 482
BspOI	GCTAGC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	376, 410
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	144, 157, 488
BssT1I	CCWWGG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	361, 534, 544
BstDEI	CTNAG	2 cut(s)	553, 562
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	468
BstMCI	CGRYCG	2 cut(s)	65, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstV1I	GCAGC	4 cut(s)	45, 94, 516, 538
BstX2I	RGATCY	3 cut(s)	139, 232, 432
BstYI	RGATCY	3 cut(s)	139, 232, 432
Bsu15I	ATCGAT	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	363, 400, 542
BsuTUI	ATCGAT	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	468
Cac8I	GCNNGC	3 cut(s)	361, 534, 544
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	4 cut(s)	398, 447, 481, 540
ClaI	ATCGAT	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	96
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	2 cut(s)	553, 562
EciI	GGCGGA	2 cut(s)	245, 280
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	447, 481
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	488
FaiI	YATR	1 cut(s)	403
FauI	CCCGC	2 cut(s)	4, 452
Fnu4HI	GCNGC	8 cut(s)	59, 105, 108, 457, 502, 505, 527, 530
FokI	GGATG	1 cut(s)	475
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	8 cut(s)	59, 105, 108, 457, 502, 505, 527, 530
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	8 cut(s)	59, 105, 108, 457, 502, 505, 527, 530
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	363, 400, 542
HapII	CCGG	3 cut(s)	241, 304, 543
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	241, 304, 543
HphI	GGTGA	2 cut(s)	344, 487
Hpy166II	GTNNAC	4 cut(s)	17, 96, 199, 369
Hpy188I	TCNGA	7 cut(s)	54, 67, 128, 133, 187, 248, 485
Hpy188III	TCNNGA	6 cut(s)	272, 304, 318, 390, 572, 581
Hpy8I	GTNNAC	4 cut(s)	17, 96, 199, 369
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	467, 568
HpyCH4V	TGCA	2 cut(s)	110, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	2 cut(s)	553, 562
HpySE526I	ACGT	2 cut(s)	467, 568
Kpn2I	TCCGGA	1 cut(s)	303
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	45, 94, 516, 538
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	467, 568
MbiI	CCGCTC	1 cut(s)	224
MflI	RGATCY	3 cut(s)	139, 232, 432
MhlI	GDGCHC	1 cut(s)	169
MmeI	TCCRAC	3 cut(s)	45, 321, 508
MroI	TCCGGA	1 cut(s)	303
MroNI	GCCGGC	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	2 cut(s)	456, 529
MspI	CCGG	3 cut(s)	241, 304, 543
MwoI	GCNNNNNNNGC	1 cut(s)	510
NaeI	GCCGGC	1 cut(s)	544
NgoMIV	GCCGGC	1 cut(s)	542
NheI	GCTAGC	1 cut(s)	532
NlaIV	GGNNCC	3 cut(s)	141, 434, 482
NmeAIII	GCCGAG	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	8 cut(s)	60, 106, 109, 458, 503, 506, 528, 531
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	3 cut(s)	141, 434, 482
PspPI	GGNCC	4 cut(s)	398, 447, 481, 540
PsuI	RGATCY	3 cut(s)	139, 232, 432
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	276
SatI	GCNGC	8 cut(s)	59, 105, 108, 457, 502, 505, 527, 530
Sau96I	GGNCC	4 cut(s)	398, 447, 481, 540
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	119
SinI	GGWCC	2 cut(s)	447, 481
SmiMI	CAYNNNNRTG	1 cut(s)	276
SspMI	CTAG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	470, 571
TaqI	TCGA	4 cut(s)	169, 190, 385, 580
TauI	GCSGC	4 cut(s)	107, 459, 504, 507
TfiI	GAWTC	1 cut(s)	268
TseI	GCWGC	4 cut(s)	58, 107, 526, 529
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	2 cut(s)	113, 234
VpaK11BI	GGWCC	2 cut(s)	447, 481
XspI	CTAG	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.