RchiOBHm_Chr1g0320291

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
7949326 .. 7951346
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55046

Sequence Viewer

Length: 270 bp
ATGATATTGATACCCTACGGTATCGCTGGAGGCCTGCATCATTTGAGAACATCAAAGGAAAAGGTGCAGATCGTTGAAAGTCTCACCCTCTTCCTTCTTGCTTTCTTCCTCTCCTCCGCTGCTCTCCCTCTGCTTCTTCCCGGTCTCCTGATGCTGCTATGTTCTATATTTTCGTCCCCCTTTTTTTCTTTATGCAGTGCTTTTTATATTGCACCGATCATGAGTTTGGTTTGTATAAAACATAGAGTTTTAGAGTTCAACTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.87

Weight (kDa)

8.99

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AgsI TTSAA 3 cut(s) 77, 259, 265
Alw26I GTCTC 2 cut(s) 86, 149
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 119, 154
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 76
BbvI GCAGC 2 cut(s) 106, 141
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 86, 149
BisI GCNGC 2 cut(s) 120, 155
BlsI GCNGC 2 cut(s) 121, 156
Bme1390I CCNGG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 46, 141
BpmI CTGGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 106, 141
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 160
BsmAI GTCTC 2 cut(s) 86, 149
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 69, 216
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 33
BspHI TCATGA 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 149
BssMI GATC 2 cut(s) 69, 216
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 72, 219
BstMAI GTCTC 2 cut(s) 86, 149
BstMBI GATC 2 cut(s) 69, 216
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 106, 141
BsuRI GGCC 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 35
CciI TCATGA 1 cut(s) 219
CviAII CATG 1 cut(s) 220
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
DpnI GATC 2 cut(s) 71, 218
DpnII GATC 2 cut(s) 69, 216
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 149
FaeI CATG 1 cut(s) 223
FaiI YATR 7 cut(s) 160, 167, 193, 207, 221, 236, 243
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 120, 155
Fsp4HI GCNGC 2 cut(s) 120, 155
GluI GCNGC 2 cut(s) 120, 155
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 141
Hin1II CATG 1 cut(s) 223
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 148, 220
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 37, 67, 195, 212
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 2 cut(s) 69, 216
LpnPI CCDG 4 cut(s) 12, 47, 154, 161
Lsp1109I GCAGC 2 cut(s) 106, 141
LweI GCATC 2 cut(s) 46, 141
MalI GATC 2 cut(s) 71, 218
MboI GATC 2 cut(s) 69, 216
MboII GAAGA 3 cut(s) 82, 97, 128
MnlI CCTC 5 cut(s) 23, 98, 119, 124, 138
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 141
NdeII GATC 2 cut(s) 69, 216
NlaIII CATG 1 cut(s) 223
PagI TCATGA 1 cut(s) 219
PceI AGGCCT 1 cut(s) 33
PkrI GCNGC 2 cut(s) 121, 156
SatI GCNGC 2 cut(s) 120, 155
Sau3AI GATC 2 cut(s) 69, 216
ScrFI CCNGG 1 cut(s) 141
SetI ASST 1 cut(s) 66
SfaNI GCATC 2 cut(s) 46, 141
SgeI CNNG 7 cut(s) 39, 46, 110, 152, 153, 160, 232
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 117
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 20
TscAI CASTG 1 cut(s) 202
TseI GCWGC 2 cut(s) 119, 154
TspRI CASTG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.