Rorug05G0063500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009732
Physical Location & Seq
Forward (+)
5520159 .. 5521735
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0063500.1

Sequence Viewer

Length: 432 bp
ATGGGAGATTACCTTGGTATGCTAAAGAATCAGCAAAATTTAAATCTTGTCAGTGAGGGACTTGTTAAGTCAATTTTAGTATTCCAGAAAGGCATTAAGACGATTGGTGGAGGTGAGCTGCCGGATGAGACAACCCTCATTTGTTCTCGAGGTGCAGACAGTGCATTGGAGTTCCTGTCCGCCTGTAAATTGGCAAACTTAACTGTAAAGGCAGAGCCGGGTTGTTGCTTGCTTCATAGAAGTGGAAGACTCACAATAGATGGGTGCGTGCTTCAGTGCCAGACAAATCCCCTAGACTTCCTTTCAGTCCCCATTGTGAGTACGGCAAGTGCGCAAACTCTGTTGTCTTCATCGGTGAAGTGTTATAAGGATGGTGTTTCTGTTTCTCAGACTCAAATTGGAGGTGCCAACTGCCAAGGCTGTTTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.03

Weight (kDa)

6.53

Isoelectric Point (pI)

24.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc16I TGCGCA 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 257
AfaI GTAC 1 cut(s) 322
AgsI TTSAA 1 cut(s) 427
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 125, 367
AvaI CYCGRG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 404
BbsI GAAGAC 2 cut(s) 253, 339
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 254, 365
BceAI ACGGC 1 cut(s) 339
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 2 cut(s) 293, 430
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 219
BpiI GAAGAC 2 cut(s) 253, 339
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 13, 415
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
BseDI CCNNGG 2 cut(s) 13, 415
BseGI GGATG 2 cut(s) 130, 376
BseMII CTCAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 122, 218
BslFI GGGAC 2 cut(s) 72, 293
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 2 cut(s) 72, 293
BsoBI CYCGRG 1 cut(s) 147
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 13, 415
BssT1I CCWWGG 2 cut(s) 13, 415
Bst4CI ACNGT 2 cut(s) 161, 205
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 230, 269
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 130, 376
BstHHI GCGC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 2 cut(s) 253, 339
BtsCI GGATG 2 cut(s) 130, 376
BtsIMutI CAGTG 3 cut(s) 58, 166, 281
Cac8I GCNNGC 2 cut(s) 230, 269
CfoI GCGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 321
CviJI RGCY 3 cut(s) 118, 217, 420
CviKI_1 RGCY 3 cut(s) 118, 217, 420
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 1 cut(s) 387
DraI TTTAAA 1 cut(s) 42
EciI GGCGGA 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 13, 415
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 13, 415
ErhI CCWWGG 2 cut(s) 13, 415
FaiI YATR 3 cut(s) 20, 237, 366
FaqI GGGAC 2 cut(s) 72, 293
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 2 cut(s) 137, 383
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 2 cut(s) 293, 430
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 119
HapII CCGG 2 cut(s) 122, 218
HhaI GCGC 1 cut(s) 334
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 3 cut(s) 28, 249, 391
HpaII CCGG 2 cut(s) 122, 218
HphI GGTGA 2 cut(s) 125, 367
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 85, 147
HpyCH4III ACNGT 2 cut(s) 161, 205
HpyCH4V TGCA 2 cut(s) 155, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 387
HspAI GCGC 1 cut(s) 332
LpnPI CCDG 6 cut(s) 98, 135, 188, 196, 231, 293
Lsp1109I GCAGC 1 cut(s) 105
MaeI CTAG 2 cut(s) 293, 430
MboII GAAGA 2 cut(s) 258, 339
MluCI AATT 4 cut(s) 37, 72, 188, 396
MlyI GAGTC 2 cut(s) 243, 385
MnlI CCTC 5 cut(s) 49, 104, 143, 146, 395
MseI TTAA 4 cut(s) 41, 66, 96, 200
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 2 cut(s) 122, 218
MspR9I CCNGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 406
NsbI TGCGCA 1 cut(s) 333
PaeR7I CTCGAG 1 cut(s) 147
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 2 cut(s) 243, 385
PpsI GAGTC 2 cut(s) 243, 385
PsiI TTATAA 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 406
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 4 cut(s) 41, 66, 96, 200
SatI GCNGC 1 cut(s) 119
SchI GAGTC 2 cut(s) 243, 385
ScrFI CCNGG 1 cut(s) 219
SetI ASST 5 cut(s) 15, 115, 120, 154, 406
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmiI ATTTAAAT 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 4 cut(s) 37, 72, 188, 396
SsiI CCGC 1 cut(s) 180
SspMI CTAG 2 cut(s) 293, 430
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 2 cut(s) 13, 415
SwaI ATTTAAAT 1 cut(s) 42
TaaI ACNGT 2 cut(s) 161, 205
TaqI TCGA 1 cut(s) 148
TasI AATT 4 cut(s) 37, 72, 188, 396
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 4 cut(s) 41, 66, 96, 200
Tru9I TTAA 4 cut(s) 41, 66, 96, 200
TscAI CASTG 3 cut(s) 58, 166, 281
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 224, 339
TspRI CASTG 3 cut(s) 58, 166, 281
XapI RAATTY 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 2 cut(s) 293, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.