Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009732

Physical Location & Seq

Genomic Coordinates Reverse (-)

20195887 .. 20198162

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGATATTGATACCCTGCGGTATCACTGGAGGCCTGCATCATTTAAGAATAGCAAAGGAAAAGGTGCACATCGGTGGTGAAAGTCTCACCCTCTTTTTCCTTGCTTTCTTCCTCTCCTTGGCTGCTATCCTCTGCTTCTTCACAGTCCTCTTCACGCTGCTATCCTCCCCACGTTCGTCCCCCTTTTTTTCCTTTATGCAGTGCTTTTTATATTCCACCGATCATGAGTTTGGTTTGTATAAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.24

Weight (kDa)

7.79

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320291 RchiOBHm_Chr1g0322931 RchiOBHm_Chr1g0343151 RchiOBHm_Chr2g0105391 RchiOBHm_Chr3g0474461 RchiOBHm_Chr3g0481781 RchiOBHm_Chr4g0409751 RchiOBHm_Chr4g0427631 RchiOBHm_Chr4g0442271 RchiOBHm_Chr5g0024691 RchiOBHm_Chr5g0048291 RchiOBHm_Chr5g0052711 RchiOBHm_Chr6g0295221
rosa_roxburghii	Rroxscaffold_2G00079540 Rroxscaffold_6G00388270
rosa_rugosa	Rorug05G0063500 Rorug07G0301300
rosa_samantha	Rh2BG470300 Rh2CG226100 Rh3AG191800 Rh5DG338800 Rh6DG326900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	89
Alw44I	GTGCAC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	122, 157
AsuHPI	GGTGA	2 cut(s)	79, 89
BaeGI	GKGCMC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	109, 144
BcoDI	GTCTC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	123, 158
BlsI	GCNGC	2 cut(s)	124, 159
BmsI	GCATC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	109, 144
BshFI	GGCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	109, 144
BsuRI	GGCC	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	24, 206
Cac8I	GCNNGC	1 cut(s)	35
CciI	TCATGA	1 cut(s)	223
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	2 cut(s)	33, 122
CviKI_1	RGCY	2 cut(s)	33, 122
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	227
FaiI	YATR	5 cut(s)	197, 211, 225, 240, 247
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	123, 158
Fsp4HI	GCNGC	2 cut(s)	123, 158
GluI	GCNGC	2 cut(s)	123, 158
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	79, 89
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	3 cut(s)	37, 67, 199
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	3 cut(s)	12, 28, 47
Lsp1109I	GCAGC	2 cut(s)	109, 144
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	172
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	100, 130, 142
MhlI	GDGCHC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	23, 101, 122, 140, 158, 175
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	72
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	33
PkrI	GCNGC	2 cut(s)	124, 159
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	2 cut(s)	123, 158
Sau3AI	GATC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	2 cut(s)	66, 175
SfaNI	GCATC	1 cut(s)	46
SgeI	CNNG	8 cut(s)	27, 39, 46, 113, 130, 166, 183, 236
SmiMI	CAYNNNNRTG	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	2 cut(s)	31, 206
TseI	GCWGC	2 cut(s)	122, 157
TspRI	CASTG	2 cut(s)	31, 206
VneI	GTGCAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.