Rroxscaffold_2G00079540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
2527574 .. 2529899
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079540.1

Sequence Viewer

Length: 246 bp
ATGATATTGATACCCTACGGTATCGCTGGAGGCCTGCATCATTTGAGAATAGCAAAGGAAAAGGTGCACATCGGTGGTGAAAGTCTCACCCTCTTTTTCCTTGCTTTCTTCCTTTCCTTGGCTGCTATCCTCTGCTTCTTCAGAGTCCTCTTCACGCTGCTATACTCCTCACGTTCGTCCCCCTCCCCTTTTTTCTTTGGCTACGAGGGCCTTTTATATTCAGCATGCTTGGGTAGTCCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.95

Weight (kDa)

7.84

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 118
AleI CACNNNNGTG 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 65
AoxI GGCC 2 cut(s) 31, 208
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 122, 157
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 79, 89
BaeGI GKGCMC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 109, 144
BcoDI GTCTC 1 cut(s) 89
BisI GCNGC 2 cut(s) 123, 158
BlsI GCNGC 2 cut(s) 124, 159
BmgT120I GGNCC 1 cut(s) 208
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 2 cut(s) 109, 144
BshFI GGCC 2 cut(s) 33, 210
BsiHKAI GWGCWC 1 cut(s) 69
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 33, 210
Bsp1286I GDGCHC 1 cut(s) 69
BspANI GGCC 2 cut(s) 33, 210
BssECI CCNNGG 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 35, 226
BstMAI GTCTC 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 109, 144
BsuRI GGCC 2 cut(s) 33, 210
Cac8I GCNNGC 2 cut(s) 35, 226
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 1 cut(s) 225
CviJI RGCY 4 cut(s) 33, 122, 201, 210
CviKI_1 RGCY 4 cut(s) 33, 122, 201, 210
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 228
FaiI YATR 3 cut(s) 163, 217, 226
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 123, 158
Fsp4HI GCNGC 2 cut(s) 123, 158
GluI GCNGC 2 cut(s) 123, 158
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 33, 210
Hin1II CATG 1 cut(s) 228
HinfI GANTC 1 cut(s) 144
HphI GGTGA 2 cut(s) 79, 89
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 37, 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 228
LpnPI CCDG 2 cut(s) 12, 47
Lsp1109I GCAGC 2 cut(s) 109, 144
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 172
MboII GAAGA 3 cut(s) 100, 130, 142
MhlI GDGCHC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 7 cut(s) 23, 101, 140, 158, 178, 193, 199
MslI CAYNNNNRTG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 207
NlaIII CATG 1 cut(s) 228
NspI RCATGY 1 cut(s) 228
OliI CACNNNNGTG 1 cut(s) 72
PaeI GCATGC 1 cut(s) 228
PceI AGGCCT 1 cut(s) 33
PkrI GCNGC 2 cut(s) 124, 159
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 72
SatI GCNGC 2 cut(s) 123, 158
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 153
SduI GDGCHC 1 cut(s) 69
SetI ASST 2 cut(s) 66, 175
SfaNI GCATC 1 cut(s) 46
SgeI CNNG 9 cut(s) 39, 46, 113, 130, 166, 183, 217, 237, 241
SmiMI CAYNNNNRTG 1 cut(s) 72
SphI GCATGC 1 cut(s) 228
SseBI AGGCCT 1 cut(s) 33
StuI AGGCCT 1 cut(s) 33
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 175
TseI GCWGC 2 cut(s) 122, 157
VneI GTGCAC 1 cut(s) 65
XceI RCATGY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.