RchiOBHm_Chr5g0052711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009732
Physical Location & Seq
Forward (+)
54768538 .. 54770749
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33008

Sequence Viewer

Length: 282 bp
ATGATATCGACACCTGAAGGCATGCCGTGTCAGAGCTCTAACAGTGTTGATACCGTAAGGCACCACCACTGGAGCTTTGATAGTAGTTTCGGCACCCTAAGGCACGCCGTGCTGGAGCTCAACGACAGCCGTGCTGCAGATCGGTGGAAGTCTCACCCACTTCTTTCTTGCTTTCTTCCACTCCTCAAGCTGCTGTGTTCCTCTCCTCCGTCCCCCCTTTTTCCTTTTCATGAAGTGCTTTTATATTGCACCGATCTTGAGTTTGGTTTGTATAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.56

Weight (kDa)

6.26

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 60, 92
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 109
AluBI AGCT 4 cut(s) 36, 75, 118, 190
AluI AGCT 4 cut(s) 36, 75, 118, 190
Alw21I GWGCWC 2 cut(s) 38, 120
Alw26I GTCTC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 134, 190
AsuHPI GGTGA 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 98
BanI GGYRCC 2 cut(s) 60, 92
BanII GRGCYC 2 cut(s) 38, 120
Bbv12I GWGCWC 2 cut(s) 38, 120
BbvI GCAGC 2 cut(s) 121, 177
BceAI ACGGC 3 cut(s) 10, 92, 114
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 135, 191
BlsI GCNGC 2 cut(s) 136, 192
BmiI GGNNCC 2 cut(s) 62, 94
BpmI CTGGAG 2 cut(s) 91, 134
BpuEI CTTGAG 2 cut(s) 170, 278
Bse1I ACTGG 1 cut(s) 74
Bse21I CCTNAGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 173, 195
BseXI GCAGC 2 cut(s) 121, 177
BshNI GGYRCC 2 cut(s) 60, 92
BsiHKAI GWGCWC 2 cut(s) 38, 120
BslFI GGGAC 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 38, 120
Bsp143I GATC 2 cut(s) 139, 253
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 62, 94
BspMAI CTGCAG 1 cut(s) 139
BspT107I GGYRCC 2 cut(s) 60, 92
BsrI ACTGG 1 cut(s) 74
BssMI GATC 2 cut(s) 139, 253
Bst4CI ACNGT 2 cut(s) 44, 55
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 23, 105
BstDEI CTNAG 1 cut(s) 98
BstKTI GATC 2 cut(s) 142, 256
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 139, 253
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 121, 177
Bsu36I CCTNAGG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 49, 67
Cac8I GCNNGC 2 cut(s) 23, 105
CciI TCATGA 1 cut(s) 229
CviAII CATG 2 cut(s) 22, 230
CviJI RGCY 5 cut(s) 36, 75, 118, 129, 190
CviKI_1 RGCY 5 cut(s) 36, 75, 118, 129, 190
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 141, 255
DpnII GATC 2 cut(s) 139, 253
DraIII CACNNNGTG 1 cut(s) 109
Ecl136II GAGCTC 2 cut(s) 36, 118
Eco24I GRGCYC 2 cut(s) 38, 120
Eco32I GATATC 1 cut(s) 6
Eco53kI GAGCTC 2 cut(s) 36, 118
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 98
EcoICRI GAGCTC 2 cut(s) 36, 118
EcoRV GATATC 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 38, 120
FaeI CATG 2 cut(s) 25, 233
FaiI YATR 5 cut(s) 23, 231, 244, 273, 280
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 21, 229
Fnu4HI GCNGC 2 cut(s) 135, 191
FriOI GRGCYC 2 cut(s) 38, 120
Fsp4HI GCNGC 2 cut(s) 135, 191
GluI GCNGC 2 cut(s) 135, 191
GsuI CTGGAG 2 cut(s) 91, 134
Hin1II CATG 2 cut(s) 25, 233
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 230, 257
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 44, 55
HpyCH4V TGCA 2 cut(s) 137, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 2 cut(s) 25, 233
Kzo9I GATC 2 cut(s) 139, 253
LmnI GCTCC 2 cut(s) 72, 115
LpnPI CCDG 3 cut(s) 27, 55, 98
Lsp1109I GCAGC 2 cut(s) 121, 177
MalI GATC 2 cut(s) 141, 255
MboI GATC 2 cut(s) 139, 253
MboII GAAGA 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 38, 120
MnlI CCTC 3 cut(s) 194, 211, 216
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 2 cut(s) 139, 253
NlaIII CATG 2 cut(s) 25, 233
NlaIV GGNNCC 2 cut(s) 62, 94
NspI RCATGY 1 cut(s) 25
PaeI GCATGC 1 cut(s) 25
PagI TCATGA 1 cut(s) 229
PkrI GCNGC 2 cut(s) 136, 192
Psp124BI GAGCTC 2 cut(s) 38, 120
PspN4I GGNNCC 2 cut(s) 62, 94
PstI CTGCAG 1 cut(s) 139
SacI GAGCTC 2 cut(s) 38, 120
SatI GCNGC 2 cut(s) 135, 191
Sau3AI GATC 2 cut(s) 139, 253
SduI GDGCHC 2 cut(s) 38, 120
SetI ASST 5 cut(s) 16, 38, 77, 120, 192
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 185, 257
SmoI CTYRAG 2 cut(s) 185, 257
SphI GCATGC 1 cut(s) 25
SstI GAGCTC 2 cut(s) 38, 120
TaaI ACNGT 2 cut(s) 44, 55
TaqI TCGA 1 cut(s) 8
TscAI CASTG 2 cut(s) 49, 74
TseI GCWGC 2 cut(s) 134, 190
TspDTI ATGAA 2 cut(s) 218, 246
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 2 cut(s) 49, 74
XceI RCATGY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.