Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009732

Physical Location & Seq

Genomic Coordinates Reverse (-)

35086023 .. 35087195

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56971

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGATATTGATACCCTACGGTATCGCTGGAGGCCTGCATCATTGGAGAACAGCAAAGGAAAAGGTGCAGATCGTTGAAAGTCTCACCCTCTTCCTTCTTGCTTTCTTCCTCTCCTCCGCTGCTCTCCCTCTGCTTCTTCCCGGTGTTCCTGGTGTTTTATCTTTTCAGCCAGACAAGAGTTATGACTCAGATAATAAAAACTATGGAGGTTTTACTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:1900865 GO:1900871 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

74

Amino Acids

8.07

Weight (kDa)

6.7

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320291 RchiOBHm_Chr1g0322931 RchiOBHm_Chr1g0343151 RchiOBHm_Chr2g0105391 RchiOBHm_Chr3g0474461 RchiOBHm_Chr3g0481781 RchiOBHm_Chr4g0409751 RchiOBHm_Chr4g0427631 RchiOBHm_Chr4g0442271 RchiOBHm_Chr5g0024691 RchiOBHm_Chr5g0048291 RchiOBHm_Chr5g0052711 RchiOBHm_Chr6g0295221
rosa_roxburghii	Rroxscaffold_2G00079540 Rroxscaffold_6G00388270
rosa_rugosa	Rorug05G0063500 Rorug07G0301300
rosa_samantha	Rh2BG470300 Rh2CG226100 Rh3AG191800 Rh5DG338800 Rh6DG326900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	141, 150
BmrFI	CCNGG	2 cut(s)	141, 150
BmsI	GCATC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	200
BssMI	GATC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	187, 222
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	139, 148
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	35
CviJI	RGCY	2 cut(s)	33, 169
CviKI_1	RGCY	2 cut(s)	33, 169
DdeI	CTNAG	2 cut(s)	187, 222
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	148
FaiI	YATR	2 cut(s)	183, 204
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	1 cut(s)	141
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	37, 67
HpyF3I	CTNAG	2 cut(s)	187, 222
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	6 cut(s)	12, 47, 135, 154, 162, 183
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	46
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	82, 97, 128
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	6 cut(s)	23, 98, 119, 124, 138, 200
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	141, 150
MvaI	CCWGG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	141, 150
SetI	ASST	2 cut(s)	66, 211
SfaNI	GCATC	1 cut(s)	46
SgeI	CNNG	9 cut(s)	39, 46, 110, 152, 153, 161, 162, 182, 187
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	139, 148
TaaI	ACNGT	1 cut(s)	20
TseI	GCWGC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.