Rh2CG226100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009732
Physical Location & Seq
Reverse (-)
22901285 .. 22901608
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG226100.1

Sequence Viewer

Length: 324 bp
ATGCTGTGTCAGAGCTCGAGGATGATACGGAACCCTATAGCACGTCATGCTAGAGCTCGACGACAATATCAACACCCTGATTCATGCTATGTCGGAGCATATATGATATTTATACCCTACGATATCACTGGAGGCCTGCAGCATTTGAGAACAACAAAGGAAAAGGTGCACATCGGTGGTGAAAGTCTCACCCTCTTCTCTCTTGCTTTCTCCCTCTCCTCGGCTGCTATCCTCTGCTTCTTCACAATCATCCTCACACTACTATGCTCCTCACCTTCGTCCTCTGCTTTCTTTTCATGTAGCACTTATATAGTGAACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.02

Weight (kDa)

9.19

Isoelectric Point (pI)

63.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 220
AjiI CACGTC 1 cut(s) 44
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 2 cut(s) 15, 56
AluI AGCT 2 cut(s) 15, 56
Alw21I GWGCWC 3 cut(s) 17, 58, 171
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 2 cut(s) 139, 224
AsuHPI GGTGA 3 cut(s) 181, 191, 264
AvaI CYCGRG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 171
BanII GRGCYC 2 cut(s) 17, 58
Bbv12I GWGCWC 3 cut(s) 17, 58, 171
BbvI GCAGC 2 cut(s) 151, 211
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 2 cut(s) 36, 137
BisI GCNGC 2 cut(s) 140, 225
BlsI GCNGC 2 cut(s) 141, 226
BmeT110I CYCGRG 1 cut(s) 16
BmgBI CACGTC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 133, 323
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 27, 249
BseLI CCNNNNNNNGG 1 cut(s) 220
BseNI ACTGG 2 cut(s) 133, 323
BseRI GAGGAG 2 cut(s) 208, 259
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 2 cut(s) 151, 211
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 3 cut(s) 17, 58, 171
BsiHKCI CYCGRG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 3 cut(s) 17, 58, 171
BspANI GGCC 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 141
BsrI ACTGG 2 cut(s) 133, 323
BssECI CCNNGG 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 137
BstF5I GGATG 2 cut(s) 27, 249
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstSFI CTRYAG 2 cut(s) 36, 137
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 151, 211
BsuRI GGCC 1 cut(s) 135
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 27, 249
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 137
CviAII CATG 3 cut(s) 47, 84, 297
CviJI RGCY 4 cut(s) 15, 56, 135, 224
CviKI_1 RGCY 4 cut(s) 15, 56, 135, 224
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 2 cut(s) 15, 56
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 17, 58
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 2 cut(s) 15, 56
Eco88I CYCGRG 1 cut(s) 16
EcoICRI GAGCTC 2 cut(s) 15, 56
EcoRV GATATC 1 cut(s) 124
EcoT38I GRGCYC 2 cut(s) 17, 58
FaeI CATG 3 cut(s) 50, 87, 300
FatI CATG 3 cut(s) 46, 83, 296
Fnu4HI GCNGC 2 cut(s) 140, 225
FokI GGATG 2 cut(s) 34, 236
FriOI GRGCYC 2 cut(s) 17, 58
Fsp4HI GCNGC 2 cut(s) 140, 225
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 140, 225
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 3 cut(s) 50, 87, 300
HinfI GANTC 1 cut(s) 80
HphI GGTGA 3 cut(s) 181, 191, 264
Hpy166II GTNNAC 2 cut(s) 169, 316
Hpy188I TCNGA 2 cut(s) 12, 95
Hpy8I GTNNAC 2 cut(s) 169, 316
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 139, 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 50, 87, 300
LmnI GCTCC 2 cut(s) 95, 272
LpnPI CCDG 4 cut(s) 90, 114, 149, 304
Lsp1109I GCAGC 2 cut(s) 151, 211
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 43
MboII GAAGA 2 cut(s) 187, 232
MhlI GDGCHC 3 cut(s) 17, 58, 171
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 9 cut(s) 12, 125, 203, 224, 229, 242, 263, 280, 292
MslI CAYNNNNRTG 2 cut(s) 174, 262
MwoI GCNNNNNNNGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 50, 87, 300
NlaIV GGNNCC 1 cut(s) 32
NmeAIII GCCGAG 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 174
PaeR7I CTCGAG 1 cut(s) 16
PceI AGGCCT 1 cut(s) 135
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 141, 226
Psp124BI GAGCTC 2 cut(s) 17, 58
PspN4I GGNNCC 1 cut(s) 32
PspXI VCTCGAGB 1 cut(s) 16
PstI CTGCAG 1 cut(s) 141
RseI CAYNNNNRTG 2 cut(s) 174, 262
SacI GAGCTC 2 cut(s) 17, 58
SatI GCNGC 2 cut(s) 140, 225
SduI GDGCHC 3 cut(s) 17, 58, 171
SetI ASST 5 cut(s) 17, 46, 58, 168, 277
SfcI CTRYAG 2 cut(s) 36, 137
Sfr274I CTCGAG 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 174, 262
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 135
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 2 cut(s) 17, 58
StuI AGGCCT 1 cut(s) 135
TaiI ACGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 17, 58
TfiI GAWTC 1 cut(s) 80
TscAI CASTG 1 cut(s) 133
TseI GCWGC 2 cut(s) 139, 224
TspDTI ATGAA 2 cut(s) 72, 285
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 16
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.