Rh3AG191800

ubiquitin-60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009732
Physical Location & Seq
Reverse (-)
18452462 .. 18464473
12012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG191800.1

Sequence Viewer

Length: 462 bp
ATGCAGGCTTTCGTGAAAACCCTAACGGGGAAGACAATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCTCCCGGACCAGCAGCGTTTGATTTTAGCCGGAAAGCAGCTTGAAGACAGCCGCACCTTGGCCGAATTTAACATCCAGAAAGAGTCGACTCTTCATCTGGTGTTGAGGCTCCATGGAGATATTAACCATATTATCGAGCCTTCTTTGATGGCCTTGGCTCGCAAGTACAATAAGGAGAAGATGATTTGCAAAGCCAGAAAGTTCAAAACGGACCAGGTGATAGTGGTCACAGCAGTGTTGGAAGTCTCGAAGCTTTATTTTAAGGGTGAGCATCTTCTTCCAAGTGCCAGTTCTGGTTTCATTTTTCCGGCAGACATGATTTTAGAGTCTGCTGCAGAACTGTATTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 ko03320 map03010 map03320
Pfam Domains
Protein Families
Ribosomal_L40e ubiquitin

Protein Analysis

153

Amino Acids

17.23

Weight (kDa)

6.91

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 2 - 71 9.1e-12 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 4 - 73 5.2e-28 Ubiquitin family
Ribosomal_L40e PF01020 81 - 100 9.1e-07 Ribosomal L40e family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 3 cut(s) 27, 97, 166
AgsI TTSAA 2 cut(s) 152, 313
AjnI CCWGG 1 cut(s) 321
AjuI GAANNNNNNNTTGG 2 cut(s) 382, 414
AleI CACNNNNGTG 1 cut(s) 341
AluBI AGCT 2 cut(s) 148, 361
AluI AGCT 2 cut(s) 148, 361
Alw26I GTCTC 1 cut(s) 358
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 81, 168, 258
ApeKI GCWGC 4 cut(s) 57, 121, 145, 440
ApoI RAATTY 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 115, 319
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 337, 386
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 2 cut(s) 115, 319
BbsI GAAGAC 2 cut(s) 38, 159
BbvI GCAGC 4 cut(s) 69, 133, 157, 427
BccI CCATC 2 cut(s) 74, 250
BciT130I CCWGG 1 cut(s) 323
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 358
BfmI CTRYAG 1 cut(s) 441
BisI GCNGC 5 cut(s) 58, 122, 146, 160, 441
BlsI GCNGC 5 cut(s) 59, 123, 147, 161, 442
Bme1390I CCNGG 2 cut(s) 113, 323
Bme18I GGWCC 2 cut(s) 115, 319
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 115, 319
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 113, 323
BmsI GCATC 2 cut(s) 114, 388
BpiI GAAGAC 2 cut(s) 38, 159
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 165, 220, 261
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 97, 166
Bse1I ACTGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 3 cut(s) 165, 220, 261
BseGI GGATG 2 cut(s) 105, 180
BseLI CCNNNNNNNGG 3 cut(s) 27, 97, 166
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 4 cut(s) 69, 133, 157, 427
BshFI GGCC 3 cut(s) 83, 170, 260
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 3 cut(s) 113, 138, 416
BslI CCNNNNNNNGG 3 cut(s) 27, 97, 166
BsmAI GTCTC 1 cut(s) 358
BsnI GGCC 3 cut(s) 83, 170, 260
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 160
BspANI GGCC 3 cut(s) 83, 170, 260
BspLI GGNNCC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 3 cut(s) 165, 220, 261
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 3 cut(s) 165, 220, 261
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 6, 268
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 2 cut(s) 105, 180
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 111, 321
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 4 cut(s) 69, 133, 157, 427
BstV2I GAAGAC 2 cut(s) 38, 159
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 3 cut(s) 83, 170, 260
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 105, 180
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 6, 268
Cfr13I GGNCC 2 cut(s) 115, 319
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 221, 424
CviQI GTAC 1 cut(s) 274
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 165, 220, 261
Eco47I GGWCC 2 cut(s) 115, 319
Eco88I CYCGRG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 3 cut(s) 165, 220, 261
ErhI CCWWGG 3 cut(s) 165, 220, 261
FaeI CATG 2 cut(s) 224, 427
FaiI YATR 3 cut(s) 222, 237, 425
FatI CATG 2 cut(s) 220, 423
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 5 cut(s) 58, 122, 146, 160, 441
FokI GGATG 2 cut(s) 92, 167
Fsp4HI GCNGC 5 cut(s) 58, 122, 146, 160, 441
GluI GCNGC 5 cut(s) 58, 122, 146, 160, 441
HaeIII GGCC 3 cut(s) 83, 170, 260
HapII CCGG 3 cut(s) 113, 138, 416
Hin1II CATG 2 cut(s) 224, 427
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 3 cut(s) 191, 196, 434
HpaII CCGG 3 cut(s) 113, 138, 416
HphI GGTGA 2 cut(s) 337, 386
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 5 cut(s) 13, 44, 52, 184, 355
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 95, 258
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 4, 297, 443
Hsp92II CATG 2 cut(s) 224, 427
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 222
Lsp1109I GCAGC 4 cut(s) 69, 133, 157, 427
LweI GCATC 2 cut(s) 114, 388
MabI ACCWGGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 6 cut(s) 43, 164, 191, 298, 374, 377
MflI RGATCY 1 cut(s) 87
MluCI AATT 1 cut(s) 173
MlyI GAGTC 3 cut(s) 190, 200, 443
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 40, 119, 207
MseI TTAA 3 cut(s) 177, 231, 369
MslI CAYNNNNRTG 1 cut(s) 341
MspI CCGG 3 cut(s) 113, 138, 416
MspR9I CCNGG 2 cut(s) 113, 323
MvaI CCWGG 1 cut(s) 323
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 220
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 224, 427
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 5 cut(s) 59, 123, 147, 161, 442
PleI GAGTC 3 cut(s) 190, 199, 442
PpsI GAGTC 3 cut(s) 190, 199, 442
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 115, 319
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 341
SalI GTCGAC 1 cut(s) 193
SaqAI TTAA 3 cut(s) 177, 231, 369
SatI GCNGC 5 cut(s) 58, 122, 146, 160, 441
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 115, 319
SchI GAGTC 3 cut(s) 190, 200, 443
ScrFI CCNGG 2 cut(s) 113, 323
SetI ASST 5 cut(s) 51, 150, 167, 327, 363
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 2 cut(s) 114, 388
SfcI CTRYAG 1 cut(s) 441
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 2 cut(s) 115, 319
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 111, 321
StyI CCWWGG 3 cut(s) 165, 220, 261
TaaI ACNGT 1 cut(s) 450
TaqI TCGA 6 cut(s) 45, 51, 69, 194, 243, 356
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 162
Tru1I TTAA 3 cut(s) 177, 231, 369
Tru9I TTAA 3 cut(s) 177, 231, 369
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 4 cut(s) 57, 121, 145, 440
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 191, 397
TspGWI ACGGA 1 cut(s) 332
TspRI CASTG 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 115, 319
XapI RAATTY 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.