RchiOBHm_Chr6g0295221

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
57310075 .. 57312001
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26492

Sequence Viewer

Length: 246 bp
ATGATATTGATACCCTACGGTATCACTGGAGGCCTGCATCATTTGAGAACAGCAAAGGAAAAGGTGCAGATCGGTGAAAGTCTCACCCTCTTCTTTCTTGCTTTCTTCCTCTCCTCCGTTGCTCTCCTTCTGCTTCTTCCCGGTCTCCTGATGCTGCTACGTTCTATTCTTTCGTCCTCCATTTTTTCTTTTCATGTAGTGCTTTTATATTGCACCGATCTTGAGTTTGGTTTGCATAAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.02

Weight (kDa)

7.98

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw26I GTCTC 2 cut(s) 86, 149
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 2 cut(s) 76, 86
BbvI GCAGC 1 cut(s) 141
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 86, 149
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 46, 141
BpmI CTGGAG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 86, 149
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 69, 217
BspANI GGCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 31
BssMI GATC 2 cut(s) 69, 217
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 72, 220
BstMAI GTCTC 2 cut(s) 86, 149
BstMBI GATC 2 cut(s) 69, 217
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 35
CviAII CATG 1 cut(s) 194
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
DpnI GATC 2 cut(s) 71, 219
DpnII GATC 2 cut(s) 69, 217
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 149
FaeI CATG 1 cut(s) 197
FaiI YATR 4 cut(s) 195, 208, 237, 244
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 141
Hin1II CATG 1 cut(s) 197
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 76, 86
Hpy188III TCNNGA 2 cut(s) 148, 221
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 37, 67, 213, 235
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 2 cut(s) 69, 217
LpnPI CCDG 4 cut(s) 12, 47, 154, 161
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 2 cut(s) 46, 141
MaeII ACGT 1 cut(s) 160
MalI GATC 2 cut(s) 71, 219
MboI GATC 2 cut(s) 69, 217
MboII GAAGA 3 cut(s) 82, 97, 128
MnlI CCTC 5 cut(s) 23, 98, 119, 124, 187
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 141
NdeII GATC 2 cut(s) 69, 217
NlaIII CATG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 33
PkrI GCNGC 1 cut(s) 156
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 2 cut(s) 69, 217
ScrFI CCNGG 1 cut(s) 141
SetI ASST 2 cut(s) 66, 163
SfaNI GCATC 2 cut(s) 46, 141
SgeI CNNG 8 cut(s) 39, 46, 110, 152, 153, 160, 206, 233
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SseBI AGGCCT 1 cut(s) 33
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 1 cut(s) 163
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.