RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0320291 RchiOBHm_Chr1g0322931 RchiOBHm_Chr1g0343151 RchiOBHm_Chr2g0105391 RchiOBHm_Chr3g0474461 RchiOBHm_Chr3g0481781 RchiOBHm_Chr4g0409751 RchiOBHm_Chr4g0427631 RchiOBHm_Chr4g0442271 RchiOBHm_Chr5g0024691 RchiOBHm_Chr5g0048291 RchiOBHm_Chr5g0052711 RchiOBHm_Chr6g0295221 |
| rosa_roxburghii | Rroxscaffold_2G00079540 Rroxscaffold_6G00388270 |
| rosa_rugosa | Rorug05G0063500 Rorug07G0301300 |
| rosa_samantha | Rh2BG470300 Rh2CG226100 Rh3AG191800 Rh5DG338800 Rh6DG326900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 104 |
| AcvI | CACGTG | 1 cut(s) | 98 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 26 |
| AflIII | ACRYGT | 1 cut(s) | 97 |
| AgsI | TTSAA | 2 cut(s) | 55, 76 |
| AjnI | CCWGG | 1 cut(s) | 103 |
| AluBI | AGCT | 3 cut(s) | 91, 183, 194 |
| AluI | AGCT | 3 cut(s) | 91, 183, 194 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| BbrPI | CACGTG | 1 cut(s) | 98 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BciT130I | CCWGG | 1 cut(s) | 105 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BfaI | CTAG | 1 cut(s) | 191 |
| Bme1390I | CCNGG | 1 cut(s) | 105 |
| BmrFI | CCNGG | 1 cut(s) | 105 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BsaAI | YACGTR | 1 cut(s) | 98 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 26 |
| BseBI | CCWGG | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseRI | GAGGAG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 26 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| Bst2UI | CCWGG | 1 cut(s) | 105 |
| Bst4CI | ACNGT | 1 cut(s) | 72 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstBAI | YACGTR | 1 cut(s) | 98 |
| BstC8I | GCNNGC | 2 cut(s) | 93, 181 |
| BstDEI | CTNAG | 1 cut(s) | 142 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 24 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstNI | CCWGG | 1 cut(s) | 105 |
| BstSCI | CCNGG | 1 cut(s) | 103 |
| Cac8I | GCNNGC | 2 cut(s) | 93, 181 |
| CviAII | CATG | 1 cut(s) | 10 |
| CviJI | RGCY | 4 cut(s) | 91, 124, 183, 194 |
| CviKI_1 | RGCY | 4 cut(s) | 91, 124, 183, 194 |
| DdeI | CTNAG | 1 cut(s) | 142 |
| DraI | TTTAAA | 1 cut(s) | 67 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco57I | CTGAAG | 1 cut(s) | 104 |
| Eco72I | CACGTG | 1 cut(s) | 98 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 24 |
| EcoRII | CCWGG | 1 cut(s) | 103 |
| FaeI | CATG | 1 cut(s) | 13 |
| FaiI | YATR | 4 cut(s) | 11, 62, 138, 159 |
| FatI | CATG | 1 cut(s) | 9 |
| FspBI | CTAG | 1 cut(s) | 191 |
| Hin1II | CATG | 1 cut(s) | 13 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HindIII | AAGCTT | 1 cut(s) | 89 |
| HinfI | GANTC | 2 cut(s) | 16, 140 |
| Hpy166II | GTNNAC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy8I | GTNNAC | 1 cut(s) | 166 |
| HpyCH4III | ACNGT | 1 cut(s) | 72 |
| HpyCH4IV | ACGT | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 179 |
| HpyF3I | CTNAG | 1 cut(s) | 142 |
| HpySE526I | ACGT | 1 cut(s) | 97 |
| Hsp92II | CATG | 1 cut(s) | 13 |
| LpnPI | CCDG | 3 cut(s) | 90, 117, 154 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeI | CTAG | 1 cut(s) | 191 |
| MaeII | ACGT | 1 cut(s) | 97 |
| MboII | GAAGA | 1 cut(s) | 110 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MlyI | GAGTC | 2 cut(s) | 10, 134 |
| MnlI | CCTC | 1 cut(s) | 30 |
| MseI | TTAA | 1 cut(s) | 66 |
| MspR9I | CCNGG | 1 cut(s) | 105 |
| MvaI | CCWGG | 1 cut(s) | 105 |
| NlaIII | CATG | 1 cut(s) | 13 |
| PleI | GAGTC | 2 cut(s) | 10, 134 |
| PmaCI | CACGTG | 1 cut(s) | 98 |
| PmlI | CACGTG | 1 cut(s) | 98 |
| PpsI | GAGTC | 2 cut(s) | 10, 134 |
| Ppu21I | YACGTR | 1 cut(s) | 98 |
| Psp6I | CCWGG | 1 cut(s) | 103 |
| PspCI | CACGTG | 1 cut(s) | 98 |
| PspGI | CCWGG | 1 cut(s) | 103 |
| SaqAI | TTAA | 1 cut(s) | 66 |
| SchI | GAGTC | 2 cut(s) | 10, 134 |
| ScrFI | CCNGG | 1 cut(s) | 105 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 5 cut(s) | 93, 100, 173, 185, 196 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| SspMI | CTAG | 1 cut(s) | 191 |
| StyD4I | CCNGG | 1 cut(s) | 103 |
| TaaI | ACNGT | 1 cut(s) | 72 |
| TaiI | ACGT | 1 cut(s) | 100 |
| Tru1I | TTAA | 1 cut(s) | 66 |
| Tru9I | TTAA | 1 cut(s) | 66 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 24 |
| XspI | CTAG | 1 cut(s) | 191 |