Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009732

Physical Location & Seq

Genomic Coordinates Reverse (-)

29885800 .. 29890707

Gene Structure 4908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0301300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTGAAGGAGACGGAATATTACGACGTCCTCGGAGTAAATCCCACAGCCACCGAAGCCGAGATCAAGAAAGCTTATTACATTAAGGCAAGACAGGTTCATCCAGATAAAAACCCGAACGATCCTCTCGCGGCGCAAAATTTTCAGGTTTTGGGAGAAGCCTACCAAGTGTTAAGTGACCCTGCTCAACGACAAGCCTATGATGCTCATGGAAAATCAGGAATCTCAACCGATGGAATTATTGATCCTGCAGCAATCTTTGCTATGCTATTTGGTAGTGAGCTTTTTGAGGAATATATTGGACAGCTAGCCATGGCATCAATGGCTTCACTAGATATTTTTACAGAAGGAGAACAGTTCGATGCCAAAAAGTTGCAAGAGAAAATGCGGGTGGTTCAAAAAGAGAGAGAAGAAAAGCTTGCAGAACTACTAAAAAATAGACTCAACCAATATGTGCAAGGAAACAAAGAGGACTTTGTTTGTCATGCTGAAGCTGAAGTCGCAAGACTTTCCAATGCAGCTTATGGTGTTGATATGTTGAATACAATCGGCTATATATATGCCAGACAGTCAGCGAAAGAGCTAGGAAAGAAAGCAATATATCTGGGAGTGCCATTTATTGCTGAGTGGTTTAGAAATAAAGGGCACTTCATTAAATCCCAAGTAACAGCAGCAACAGGTGCGATTGCTTTGATCCAACTGCAAGAAGACATGAAAAAGCAACTAAATGCAGAAGGAAATTACACTGAGGAAGAGCTTGAAGAATACATGCAAAATAACAAGAAGTTGATGATTGATTCCCTGTGGAAGCTCAATGTGGCTGATATTGAGGCCACTCTCTCCCGCGTTTGTCAGATGGTTCTTCAAGACAGCAGTGCCAAGAAAGAGGAACTCCGTGCACGAGCAAAGGGGTTAAAAACTCTTGGCAAAATCTTCCAGAGAATCAAGTCTACCAATGGAGTTGAGGGTGAAGGTGGACCAAATAGTCTTAATGGAATTGAATCAAGCCGCGATGCTTCTCCTTCAACAACACCAAGGTCCTCAGTAAGCTCTTATGCACCACAGGTGCCACAGAGCCCCTACGTGGAACTTGCAGGTGTGCAGTTTGACAACTTCCCTAGGCCAACTGCACCACCTGGTGCACAGAGACATTCTTCCATGGGCAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

390

Amino Acids

43.31

Weight (kDa)

5.64

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 68	2e-25	DnaJ domain
DnaJ-X	PF14308	133 - 321	4.5e-56	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0320291 RchiOBHm_Chr1g0322931 RchiOBHm_Chr1g0343151 RchiOBHm_Chr2g0105391 RchiOBHm_Chr3g0474461 RchiOBHm_Chr3g0481781 RchiOBHm_Chr4g0409751 RchiOBHm_Chr4g0427631 RchiOBHm_Chr4g0442271 RchiOBHm_Chr5g0024691 RchiOBHm_Chr5g0048291 RchiOBHm_Chr5g0052711 RchiOBHm_Chr6g0295221
rosa_roxburghii	Rroxscaffold_2G00079540 Rroxscaffold_6G00388270
rosa_rugosa	Rorug05G0063500 Rorug07G0301300
rosa_samantha	Rh2BG470300 Rh2CG226100 Rh3AG191800 Rh5DG338800 Rh6DG326900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1085
AasI	GACNNNNNNGTC	1 cut(s)	984
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	1085
AccB1I	GGYRCC	1 cut(s)	1066
AccI	GTMKAC	1 cut(s)	950
AccII	CGCG	3 cut(s)	131, 846, 1011
AciI	CCGC	4 cut(s)	131, 388, 844, 1009
AclWI	GGATC	3 cut(s)	116, 239, 688
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	510, 516
AcyI	GRCGYC	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	1139
AfiI	CCNNNNNNNGG	2 cut(s)	1084, 1164
AgsI	TTSAA	6 cut(s)	398, 541, 761, 866, 1001, 1026
AjnI	CCWGG	1 cut(s)	1135
Alw21I	GWGCWC	2 cut(s)	901, 1144
Alw26I	GTCTC	2 cut(s)	5, 1141
Alw44I	GTGCAC	2 cut(s)	897, 1140
AlwI	GGATC	3 cut(s)	116, 239, 688
AoxI	GGCC	2 cut(s)	831, 1121
ApaLI	GTGCAC	2 cut(s)	897, 1140
ApeKI	GCWGC	3 cut(s)	251, 518, 671
ApoI	RAATTY	1 cut(s)	139
AspA2I	CCTAGG	1 cut(s)	1118
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	977, 1038
AsuHPI	GGTGA	2 cut(s)	16, 980
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	977, 1038
AvrII	CCTAGG	1 cut(s)	1118
BaeGI	GKGCMC	3 cut(s)	648, 901, 1144
BanI	GGYRCC	1 cut(s)	1066
BanII	GRGCYC	1 cut(s)	1079
BauI	CACGAG	1 cut(s)	900
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	901, 1144
BbvI	GCAGC	3 cut(s)	263, 530, 683
BccI	CCATC	2 cut(s)	227, 850
BciT130I	CCWGG	1 cut(s)	1137
BcoDI	GTCTC	2 cut(s)	5, 1141
BfaI	CTAG	4 cut(s)	308, 332, 584, 1119
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	1085
BisI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
BlnI	CCTAGG	1 cut(s)	1118
BlsI	GCNGC	5 cut(s)	133, 253, 520, 673, 1010
Bme1390I	CCNGG	1 cut(s)	1137
Bme18I	GGWCC	2 cut(s)	977, 1038
BmgT120I	GGNCC	2 cut(s)	977, 1038
BmiI	GGNNCC	1 cut(s)	1068
BmrFI	CCNGG	1 cut(s)	1137
BmsI	GCATC	4 cut(s)	193, 326, 352, 1003
BmtI	GCTAGC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	714
BsaAI	YACGTR	1 cut(s)	1084
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	5 cut(s)	31, 312, 1034, 1118, 1158
Bsc4I	CCNNNNNNNGG	2 cut(s)	1084, 1164
BseBI	CCWGG	1 cut(s)	1137
BseDI	CCNNGG	5 cut(s)	31, 312, 1034, 1118, 1158
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	2 cut(s)	1084, 1164
BseMII	CTCAG	3 cut(s)	615, 738, 1056
BseSI	GKGCMC	3 cut(s)	648, 901, 1144
BseXI	GCAGC	3 cut(s)	263, 530, 683
BsgI	GTGCAG	2 cut(s)	1113, 1121
Bsh1236I	CGCG	3 cut(s)	131, 846, 1011
BshFI	GGCC	2 cut(s)	833, 1123
BshNI	GGYRCC	1 cut(s)	1066
BsiHKAI	GWGCWC	2 cut(s)	901, 1144
BslI	CCNNNNNNNGG	2 cut(s)	1084, 1164
BsmAI	GTCTC	2 cut(s)	5, 1141
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	2 cut(s)	833, 1123
Bsp1286I	GDGCHC	4 cut(s)	648, 901, 1079, 1144
Bsp143I	GATC	4 cut(s)	63, 121, 244, 693
Bsp19I	CCATGG	2 cut(s)	312, 1158
BspACI	CCGC	4 cut(s)	131, 388, 844, 1009
BspANI	GGCC	2 cut(s)	833, 1123
BspCNI	CTCAG	3 cut(s)	616, 739, 1055
BspFNI	CGCG	3 cut(s)	131, 846, 1011
BspLI	GGNNCC	1 cut(s)	1068
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	1085
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	116, 239, 688
BspQI	GCTCTTC	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	1066
BssECI	CCNNGG	5 cut(s)	31, 312, 1034, 1118, 1158
BssMI	GATC	4 cut(s)	63, 121, 244, 693
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	4 cut(s)	312, 1034, 1118, 1158
Bst2BI	CACGAG	1 cut(s)	900
Bst2UI	CCWGG	1 cut(s)	1137
Bst4CI	ACNGT	2 cut(s)	357, 570
Bst6I	CTCTTC	1 cut(s)	747
BstACI	GRCGYC	1 cut(s)	27
BstAPI	GCANNNNNTGC	2 cut(s)	260, 680
BstBAI	YACGTR	1 cut(s)	1084
BstC8I	GCNNGC	2 cut(s)	309, 420
BstDEI	CTNAG	3 cut(s)	624, 747, 1042
BstDSI	CCRYGG	2 cut(s)	312, 1158
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	3 cut(s)	131, 846, 1011
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	66, 124, 247, 696
BstMAI	GTCTC	2 cut(s)	5, 1141
BstMBI	GATC	4 cut(s)	63, 121, 244, 693
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 203, 260, 323, 500, 680
BstNI	CCWGG	1 cut(s)	1137
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	1135
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	3 cut(s)	648, 901, 1144
BstUI	CGCG	3 cut(s)	131, 846, 1011
BstV1I	GCAGC	3 cut(s)	263, 530, 683
BstV2I	GAAGAC	1 cut(s)	714
BsuRI	GGCC	2 cut(s)	833, 1123
BtgI	CCRYGG	2 cut(s)	312, 1158
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	2 cut(s)	744, 880
BveI	ACCTGC	1 cut(s)	1085
Cac8I	GCNNGC	2 cut(s)	309, 420
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	977, 1038
CsiI	ACCWGGT	1 cut(s)	1135
CviAII	CATG	6 cut(s)	209, 313, 485, 712, 769, 1159
DdeI	CTNAG	3 cut(s)	624, 747, 1042
DpnI	GATC	4 cut(s)	65, 123, 246, 695
DpnII	GATC	4 cut(s)	63, 121, 244, 693
DraIII	CACNNNGTG	1 cut(s)	1139
DrdI	GACNNNNNNGTC	1 cut(s)	984
DseDI	GACNNNNNNGTC	1 cut(s)	984
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
Eco130I	CCWWGG	4 cut(s)	312, 1034, 1118, 1158
Eco24I	GRGCYC	1 cut(s)	1079
Eco47I	GGWCC	2 cut(s)	977, 1038
Eco57I	CTGAAG	2 cut(s)	510, 516
EcoO109I	RGGNCCY	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	1135
EcoT14I	CCWWGG	4 cut(s)	312, 1034, 1118, 1158
EcoT38I	GRGCYC	1 cut(s)	1079
ErhI	CCWWGG	4 cut(s)	312, 1034, 1118, 1158
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	6 cut(s)	212, 316, 488, 715, 772, 1162
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	6 cut(s)	208, 312, 484, 711, 768, 1158
FauI	CCCGC	2 cut(s)	381, 851
FblI	GTMKAC	1 cut(s)	950
Fnu4HI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	1079
Fsp4HI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
FspBI	CTAG	4 cut(s)	308, 332, 584, 1119
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
HaeIII	GGCC	2 cut(s)	833, 1123
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	212, 316, 488, 715, 772, 1162
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	2 cut(s)	72, 416
HinfI	GANTC	5 cut(s)	222, 441, 797, 942, 1001
HphI	GGTGA	2 cut(s)	16, 980
Hpy166II	GTNNAC	4 cut(s)	899, 951, 977, 1142
Hpy188I	TCNGA	2 cut(s)	35, 855
Hpy188III	TCNNGA	5 cut(s)	67, 104, 219, 866, 937
Hpy8I	GTNNAC	4 cut(s)	899, 951, 977, 1142
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	341, 728, 965, 1032
HpyCH4III	ACNGT	2 cut(s)	357, 570
HpyCH4IV	ACGT	2 cut(s)	27, 1083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 203, 260, 323, 500, 680
HpyF3I	CTNAG	3 cut(s)	624, 747, 1042
HpySE526I	ACGT	2 cut(s)	27, 1083
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	212, 316, 488, 715, 772, 1162
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	63, 121, 244, 693
LguI	GCTCTTC	1 cut(s)	747
Lsp1109I	GCAGC	3 cut(s)	263, 530, 683
LweI	GCATC	4 cut(s)	193, 326, 352, 1003
MabI	ACCWGGT	1 cut(s)	1135
MaeI	CTAG	4 cut(s)	308, 332, 584, 1119
MaeII	ACGT	2 cut(s)	27, 1083
MaeIII	GTNAC	2 cut(s)	176, 664
MalI	GATC	4 cut(s)	65, 123, 246, 695
MboI	GATC	4 cut(s)	63, 121, 244, 693
MboII	GAAGA	7 cut(s)	422, 719, 764, 773, 854, 925, 1146
MhlI	GDGCHC	4 cut(s)	648, 901, 1079, 1144
MluCI	AATT	4 cut(s)	139, 237, 739, 996
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	9 cut(s)	41, 135, 283, 463, 742, 823, 880, 958, 1051
MseI	TTAA	6 cut(s)	84, 173, 654, 914, 990, 1171
MspR9I	CCNGG	1 cut(s)	1137
MvaI	CCWGG	1 cut(s)	1137
MvnI	CGCG	3 cut(s)	131, 846, 1011
MwoI	GCNNNNNNNGC	6 cut(s)	56, 203, 260, 323, 500, 680
NcoI	CCATGG	2 cut(s)	312, 1158
NdeII	GATC	4 cut(s)	63, 121, 244, 693
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	6 cut(s)	212, 316, 488, 715, 772, 1162
NlaIV	GGNNCC	1 cut(s)	1068
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	772
PaqCI	CACCTGC	1 cut(s)	1085
PciSI	GCTCTTC	1 cut(s)	747
PfeI	GAWTC	4 cut(s)	222, 797, 942, 1001
PkrI	GCNGC	5 cut(s)	133, 253, 520, 673, 1010
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Ppu21I	YACGTR	1 cut(s)	1084
PpuMI	RGGWCCY	1 cut(s)	1038
Psp5II	RGGWCCY	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	1135
PspGI	CCWGG	1 cut(s)	1135
PspN4I	GGNNCC	1 cut(s)	1068
PspPI	GGNCC	2 cut(s)	977, 1038
PspPPI	RGGWCCY	1 cut(s)	1038
PstI	CTGCAG	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	6 cut(s)	84, 173, 654, 914, 990, 1171
SatI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
Sau3AI	GATC	4 cut(s)	63, 121, 244, 693
Sau96I	GGNCC	2 cut(s)	977, 1038
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	1137
SduI	GDGCHC	4 cut(s)	648, 901, 1079, 1144
SexAI	ACCWGGT	1 cut(s)	1135
SfaNI	GCATC	4 cut(s)	193, 326, 352, 1003
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	977, 1038
Sse9I	AATT	4 cut(s)	139, 237, 739, 996
SsiI	CCGC	4 cut(s)	131, 388, 844, 1009
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	4 cut(s)	308, 332, 584, 1119
StyD4I	CCNGG	1 cut(s)	1135
StyI	CCWWGG	4 cut(s)	312, 1034, 1118, 1158
TaaI	ACNGT	2 cut(s)	357, 570
TaiI	ACGT	2 cut(s)	30, 1086
TaqI	TCGA	1 cut(s)	360
TasI	AATT	4 cut(s)	139, 237, 739, 996
TauI	GCSGC	2 cut(s)	134, 1011
TfiI	GAWTC	4 cut(s)	222, 797, 942, 1001
Tru1I	TTAA	6 cut(s)	84, 173, 654, 914, 990, 1171
Tru9I	TTAA	6 cut(s)	84, 173, 654, 914, 990, 1171
TscAI	CASTG	2 cut(s)	751, 880
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	251, 518, 671
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	89, 640, 728
TspGWI	ACGGA	2 cut(s)	29, 884
TspRI	CASTG	2 cut(s)	751, 880
VneI	GTGCAC	2 cut(s)	897, 1140
VpaK11BI	GGWCC	2 cut(s)	977, 1038
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmaJI	CCTAGG	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	950
XspI	CTAG	4 cut(s)	308, 332, 584, 1119
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.