RchiOBHm_Chr1g0337161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016970
Physical Location & Seq
Reverse (-)
28850091 .. 28850365
275 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56507

Sequence Viewer

Length: 189 bp
ATGAATTTGGGTTGCTTCTGGGCCCAGTTTAACTTTTTGTTGGGCCAGACGTCTCCATGGGTCTGGATTTGGGACCCAGGAGACCTTCTATCTAGTTGCTGTTTAAGTTTTGCTACTTGTAATATTTTGGATGTGCTGCGTTTACTTTTGGGTAAATTGATCATTGCTACATTCTATGAAGAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.08

Weight (kDa)

4.1

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 50
AjnI CCWGG 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 57, 75
AoxI GGCC 2 cut(s) 21, 43
ApaI GGGCCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 4 cut(s) 21, 22, 43, 73
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 57, 75
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 4 cut(s) 21, 22, 43, 73
BmiI GGNNCC 3 cut(s) 23, 74, 75
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 56, 76
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 56, 76
BseGI GGATG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 123
BshFI GGCC 2 cut(s) 23, 45
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 57, 75
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 23, 45
Bso31I GGTCTC 1 cut(s) 75
Bsp120I GGGCCC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 56
BspANI GGCC 2 cut(s) 23, 45
BspLI GGNNCC 3 cut(s) 23, 74, 75
BspTNI GGTCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 56, 76
BssMI GATC 1 cut(s) 159
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 174
BstACI GRCGYC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 162
BstMAI GTCTC 2 cut(s) 57, 75
BstMBI GATC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 123
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 23, 45
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 136
Cfr13I GGNCC 4 cut(s) 21, 22, 43, 73
CviAII CATG 1 cut(s) 57
CviJI RGCY 2 cut(s) 23, 45
CviKI_1 RGCY 2 cut(s) 23, 45
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 1 cut(s) 60
FaiI YATR 2 cut(s) 58, 177
FaqI GGGAC 1 cut(s) 86
FatI CATG 1 cut(s) 56
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 137
HaeIII GGCC 2 cut(s) 23, 45
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 60
HinfI GANTC 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 60
KflI GGGWCCC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 1 cut(s) 159
LpnPI CCDG 6 cut(s) 4, 38, 49, 59, 63, 90
Lsp1109I GCAGC 1 cut(s) 123
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 50
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 4, 155
MseI TTAA 2 cut(s) 30, 104
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 56
NdeII GATC 1 cut(s) 159
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 3 cut(s) 23, 74, 75
PkrI GCNGC 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 3 cut(s) 23, 74, 75
PspOMI GGGCCC 1 cut(s) 21
PspPI GGNCC 4 cut(s) 21, 22, 43, 73
PspPPI RGGWCCY 1 cut(s) 73
SaqAI TTAA 2 cut(s) 30, 104
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 4 cut(s) 21, 22, 43, 73
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 25
SetI ASST 2 cut(s) 53, 87
SgeI CNNG 9 cut(s) 31, 37, 58, 69, 76, 89, 90, 105, 129
SinI GGWCC 1 cut(s) 73
Sse9I AATT 2 cut(s) 4, 155
SspI AATATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 53
TasI AATT 2 cut(s) 4, 155
Tru1I TTAA 2 cut(s) 30, 104
Tru9I TTAA 2 cut(s) 30, 104
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.