Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016970

Physical Location & Seq

Genomic Coordinates Reverse (-)

79549529 .. 79559087

Gene Structure 9559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAAGGTCATAATGATGCTGGTCCTGTTGATATTATTAGCGCAGAGAGGAGCTGTTGCTTGCGATTTGTGAATTTGGATTTGGATCAAGGTAATTGTGGTCAGATAATCGAGGTGACCATTTGTGAGGACTTGATAGCAGTAAGTAGAACAAAGAACCAGCTAAAGATGAGGAGTCTGAACTGCTATCGTCAACAAGTTTTAGGCAAAACTGACGCGATCTGGAAGGCGAGTAGCGAACTGGTGACAGGTCGAGCAAGCGGTTTGCAGATGTTGTTTTGTGATGGCGGTGCGGATTTTGGTGGCGATGATGCTCTTAATAGCGGTGGCCACTTTCTCGCCGGAGGTCCAAATGCAGCCGAGACTGGTCAGCTGTGCCTGGTTGCCCAATGTTGGGACACCCATATCAGAAAGTGGGGAACTATGGATGAGCTGCTTTTGGCCCCAACATTTATTCTTTCTACATATTATCAAGAGTCTCAGTGTAATCATATTATGAGTACCACAATTGCGTGCCTTGACAAACAGTGTATTGTAGGCTGGGAAAAATCTACAGTTGATTGGTATGCTAATTTCTTACATGCCAAAACTGTAGATTCTAATGGTCTGATCTACAAATCTCAAGGTCATGACAATGGTTCTATTGTTGATAATTATCTTAAGGAGGGCAGCCCCAAAGAGAAGAGGCCCAATCCATGGCCCAGCAAGCTAGGGTTGGCCAAACCCATACCACCCTTCCACCACTCCTGCAGTAGGTTGTGCAGCGCCGCCCTCGAGCCCCACCCACAAAGCCACTCCACGAGCCGGCCTCGCCTCGAGTCTTGCCTCACCATTGGTAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.77

Weight (kDa)

6.19

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337161 RchiOBHm_Chr1g0350891 RchiOBHm_Chr3g0469761 RchiOBHm_Chr5g0032021
rosa_laevigata	RLG00000003109 RLG00000018290 RLG00000021581 RLG00000036216
rosa_multiflora	Rmu_sc0003636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00115230 Rroxscaffold_2G00141270 Rroxscaffold_3G00238180 Rroxscaffold_4G00327250
rosa_rugosa	Rorug04G0088000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	696
AccII	CGCG	1 cut(s)	218
AciI	CCGC	5 cut(s)	261, 288, 293, 324, 768
AclWI	GGATC	1 cut(s)	93
AcoI	YGGCCR	2 cut(s)	328, 717
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	5 cut(s)	393, 394, 696, 753, 804
AflII	CTTAAG	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	54, 163, 373, 433, 709
AluI	AGCT	5 cut(s)	54, 163, 373, 433, 709
Alw26I	GTCTC	2 cut(s)	356, 483
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	773, 815
AoxI	GGCC	6 cut(s)	328, 441, 686, 698, 717, 806
ApeKI	GCWGC	4 cut(s)	356, 433, 669, 762
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	44, 767
AspS9I	GGNCC	5 cut(s)	23, 347, 442, 687, 699
AsuHPI	GGTGA	3 cut(s)	127, 256, 820
AvaI	CYCGRG	2 cut(s)	773, 815
AvaII	GGWCC	2 cut(s)	23, 347
BalI	TGGCCA	2 cut(s)	330, 719
BanII	GRGCYC	1 cut(s)	780
BauI	CACGAG	1 cut(s)	799
BbvI	GCAGC	4 cut(s)	368, 420, 681, 774
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	356, 483
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	3 cut(s)	552, 591, 748
BfoI	RGCGCY	1 cut(s)	768
BfrI	CTTAAG	1 cut(s)	659
BisI	GCNGC	5 cut(s)	357, 434, 670, 763, 768
BlsI	GCNGC	5 cut(s)	358, 435, 671, 764, 769
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	2 cut(s)	23, 347
BmeT110I	CYCGRG	2 cut(s)	773, 815
BmgT120I	GGNCC	5 cut(s)	23, 347, 442, 687, 699
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	7, 301
BplI	GAGNNNNNCTC	2 cut(s)	793, 825
BpuEI	CTTGAG	1 cut(s)	606
BsaBI	GATNNNNATC	2 cut(s)	84, 654
BsaJI	CCNNGG	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	5 cut(s)	393, 394, 696, 753, 804
Bse118I	RCCGGY	1 cut(s)	804
Bse1I	ACTGG	2 cut(s)	246, 370
Bse8I	GATNNNNATC	2 cut(s)	84, 654
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	1 cut(s)	433
BseJI	GATNNNNATC	2 cut(s)	84, 654
BseLI	CCNNNNNNNGG	5 cut(s)	393, 394, 696, 753, 804
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	2 cut(s)	246, 370
BseRI	GAGGAG	2 cut(s)	64, 187
BseXI	GCAGC	4 cut(s)	368, 420, 681, 774
BseYI	CCCAGC	2 cut(s)	540, 701
BsgI	GTGCAG	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	6 cut(s)	330, 443, 688, 700, 719, 808
BsiHKCI	CYCGRG	2 cut(s)	773, 815
BsiSI	CCGG	2 cut(s)	342, 805
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	5 cut(s)	393, 394, 696, 753, 804
BsmAI	GTCTC	2 cut(s)	356, 483
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	6 cut(s)	330, 443, 688, 700, 719, 808
BsoBI	CYCGRG	2 cut(s)	773, 815
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	3 cut(s)	85, 219, 609
Bsp19I	CCATGG	1 cut(s)	695
BspACI	CCGC	5 cut(s)	261, 288, 293, 324, 768
BspANI	GGCC	6 cut(s)	330, 443, 688, 700, 719, 808
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	752
BspPI	GGATC	1 cut(s)	93
BspTI	CTTAAG	1 cut(s)	659
BsrFI	RCCGGY	1 cut(s)	804
BsrI	ACTGG	2 cut(s)	246, 370
BssAI	RCCGGY	1 cut(s)	804
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	3 cut(s)	85, 219, 609
BssSI	CACGAG	1 cut(s)	799
BssT1I	CCWWGG	1 cut(s)	695
Bst2BI	CACGAG	1 cut(s)	799
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	528, 556, 592
Bst6I	CTCTTC	1 cut(s)	677
BstAFI	CTTAAG	1 cut(s)	659
BstC8I	GCNNGC	5 cut(s)	62, 259, 514, 707, 806
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	695
BstEII	GGTNACC	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	751
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	2 cut(s)	44, 767
BstKTI	GATC	3 cut(s)	88, 222, 612
BstMAI	GTCTC	2 cut(s)	356, 483
BstMBI	GATC	3 cut(s)	85, 219, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	706, 810
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	584
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	3 cut(s)	552, 591, 748
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	368, 420, 681, 774
BsuRI	GGCC	6 cut(s)	330, 443, 688, 700, 719, 808
BtgI	CCRYGG	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	488, 533
Cac8I	GCNNGC	5 cut(s)	62, 259, 514, 707, 806
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	2 cut(s)	44, 767
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	5 cut(s)	23, 347, 442, 687, 699
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	4 cut(s)	581, 629, 696, 843
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	3 cut(s)	87, 221, 611
DpnII	GATC	3 cut(s)	85, 219, 609
EaeI	YGGCCR	2 cut(s)	328, 717
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	695
Eco24I	GRGCYC	1 cut(s)	780
Eco47I	GGWCC	2 cut(s)	23, 347
Eco88I	CYCGRG	2 cut(s)	773, 815
Eco91I	GGTNACC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	751
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	4 cut(s)	584, 632, 699, 846
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	580, 628, 695, 842
Fnu4HI	GCNGC	5 cut(s)	357, 434, 670, 763, 768
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	5 cut(s)	357, 434, 670, 763, 768
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	2 cut(s)	43, 766
GluI	GCNGC	5 cut(s)	357, 434, 670, 763, 768
GsaI	CCCAGC	2 cut(s)	544, 705
HaeII	RGCGCY	1 cut(s)	768
HaeIII	GGCC	6 cut(s)	330, 443, 688, 700, 719, 808
HapII	CCGG	2 cut(s)	342, 805
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	44, 767
Hin1II	CATG	4 cut(s)	584, 632, 699, 846
Hin6I	GCGC	2 cut(s)	42, 765
HinP1I	GCGC	2 cut(s)	42, 765
HincII	GTYRAC	1 cut(s)	194
HindII	GTYRAC	1 cut(s)	194
HinfI	GANTC	4 cut(s)	175, 476, 596, 818
HpaII	CCGG	2 cut(s)	342, 805
HphI	GGTGA	3 cut(s)	127, 256, 820
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	4 cut(s)	105, 180, 410, 609
Hpy188III	TCNNGA	3 cut(s)	223, 473, 629
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	220, 745
HpyCH4III	ACNGT	3 cut(s)	528, 556, 592
HpyCH4V	TGCA	4 cut(s)	268, 356, 750, 762
HpyF10VI	GCNNNNNNNGC	2 cut(s)	706, 810
HpyF3I	CTNAG	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	584, 632, 699, 846
HspAI	GCGC	2 cut(s)	42, 765
KroI	GCCGGC	1 cut(s)	804
KroNI	GCCGGC	1 cut(s)	806
Kzo9I	GATC	3 cut(s)	85, 219, 609
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	4 cut(s)	368, 420, 681, 774
LweI	GCATC	2 cut(s)	7, 301
MaeI	CTAG	1 cut(s)	710
MaeIII	GTNAC	2 cut(s)	115, 244
MalI	GATC	3 cut(s)	87, 221, 611
MboI	GATC	3 cut(s)	85, 219, 609
MboII	GAAGA	1 cut(s)	694
MfeI	CAATTG	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	2 cut(s)	330, 719
MluCI	AATT	5 cut(s)	73, 94, 507, 571, 652
MluNI	TGGCCA	2 cut(s)	330, 719
MlyI	GAGTC	3 cut(s)	184, 485, 827
Mox20I	TGGCCA	2 cut(s)	330, 719
MroNI	GCCGGC	1 cut(s)	804
MscI	TGGCCA	2 cut(s)	330, 719
MseI	TTAA	2 cut(s)	318, 660
MslI	CAYNNNNRTG	2 cut(s)	15, 633
Msp20I	TGGCCA	2 cut(s)	330, 719
MspA1I	CMGCKG	1 cut(s)	373
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	2 cut(s)	342, 805
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	706, 810
NaeI	GCCGGC	1 cut(s)	806
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	3 cut(s)	85, 219, 609
NgoMIV	GCCGGC	1 cut(s)	804
NlaIII	CATG	4 cut(s)	584, 632, 699, 846
NlaIV	GGNNCC	1 cut(s)	444
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	115, 244
NspI	RCATGY	1 cut(s)	584
PaeR7I	CTCGAG	2 cut(s)	773, 815
PagI	TCATGA	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	596
PflMI	CCANNNNNTGG	1 cut(s)	696
PkrI	GCNGC	5 cut(s)	358, 435, 671, 764, 769
PleI	GAGTC	3 cut(s)	183, 484, 826
PpsI	GAGTC	3 cut(s)	183, 484, 826
Psp6I	CCWGG	1 cut(s)	378
PspEI	GGTNACC	1 cut(s)	115
PspFI	CCCAGC	2 cut(s)	540, 701
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	5 cut(s)	23, 347, 442, 687, 699
PspXI	VCTCGAGB	2 cut(s)	773, 815
PstI	CTGCAG	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	2 cut(s)	15, 633
SaqAI	TTAA	2 cut(s)	318, 660
SatI	GCNGC	5 cut(s)	357, 434, 670, 763, 768
Sau3AI	GATC	3 cut(s)	85, 219, 609
Sau96I	GGNCC	5 cut(s)	23, 347, 442, 687, 699
SchI	GAGTC	3 cut(s)	184, 485, 827
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	2 cut(s)	7, 301
SfcI	CTRYAG	3 cut(s)	552, 591, 748
Sfr274I	CTCGAG	2 cut(s)	773, 815
SinI	GGWCC	2 cut(s)	23, 347
SlaI	CTCGAG	2 cut(s)	773, 815
SmiMI	CAYNNNNRTG	2 cut(s)	15, 633
SmlI	CTYRAG	4 cut(s)	621, 659, 773, 815
SmoI	CTYRAG	4 cut(s)	621, 659, 773, 815
Sse9I	AATT	5 cut(s)	73, 94, 507, 571, 652
SsiI	CCGC	5 cut(s)	261, 288, 293, 324, 768
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	3 cut(s)	528, 556, 592
TaqI	TCGA	4 cut(s)	111, 253, 774, 816
TasI	AATT	5 cut(s)	73, 94, 507, 571, 652
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	2 cut(s)	318, 660
Tru9I	TTAA	2 cut(s)	318, 660
TscAI	CASTG	2 cut(s)	488, 533
TseFI	GTSAC	2 cut(s)	115, 244
TseI	GCWGC	4 cut(s)	356, 433, 669, 762
Tsp45I	GTSAC	2 cut(s)	115, 244
TspRI	CASTG	2 cut(s)	488, 533
Van91I	CCANNNNNTGG	1 cut(s)	696
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	2 cut(s)	23, 347
XagI	CCTNNNNNAGG	1 cut(s)	751
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	584
XhoI	CTCGAG	2 cut(s)	773, 815
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.