Transcription initiation factor
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0337161 RchiOBHm_Chr1g0350891 RchiOBHm_Chr3g0469761 RchiOBHm_Chr5g0032021 |
| rosa_laevigata | RLG00000003109 RLG00000018290 RLG00000021581 RLG00000036216 |
| rosa_multiflora | Rmu_sc0003636.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00115230 Rroxscaffold_2G00141270 Rroxscaffold_3G00238180 Rroxscaffold_4G00327250 |
| rosa_rugosa | Rorug04G0088000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 345 |
| AccI | GTMKAC | 1 cut(s) | 532 |
| AciI | CCGC | 3 cut(s) | 266, 495, 514 |
| AclWI | GGATC | 2 cut(s) | 321, 594 |
| AcsI | RAATTY | 2 cut(s) | 161, 428 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AcyI | GRCGYC | 1 cut(s) | 342 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 65 |
| AgsI | TTSAA | 2 cut(s) | 132, 440 |
| AlwI | GGATC | 2 cut(s) | 321, 594 |
| AoxI | GGCC | 1 cut(s) | 404 |
| ApaI | GGGCCC | 1 cut(s) | 408 |
| ApoI | RAATTY | 2 cut(s) | 161, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 127 |
| AspLEI | GCGC | 1 cut(s) | 387 |
| AspS9I | GGNCC | 3 cut(s) | 56, 404, 405 |
| AsuHPI | GGTGA | 2 cut(s) | 196, 255 |
| AvaII | GGWCC | 1 cut(s) | 56 |
| BaeGI | GKGCMC | 1 cut(s) | 408 |
| BanII | GRGCYC | 1 cut(s) | 408 |
| BccI | CCATC | 2 cut(s) | 14, 189 |
| BfaI | CTAG | 2 cut(s) | 111, 120 |
| BfmI | CTRYAG | 2 cut(s) | 168, 480 |
| Bme18I | GGWCC | 1 cut(s) | 56 |
| BmgT120I | GGNCC | 3 cut(s) | 56, 404, 405 |
| BmiI | GGNNCC | 1 cut(s) | 406 |
| BmsI | GCATC | 2 cut(s) | 428, 540 |
| BoxI | GACNNNNGTC | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 3 cut(s) | 24, 98, 135 |
| BsaHI | GRCGYC | 1 cut(s) | 342 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 500, 530 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseGI | GGATG | 1 cut(s) | 200 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseRI | GAGGAG | 2 cut(s) | 95, 585 |
| BseSI | GKGCMC | 1 cut(s) | 408 |
| BseYI | CCCAGC | 1 cut(s) | 86 |
| BshFI | GGCC | 1 cut(s) | 406 |
| BsiSI | CCGG | 1 cut(s) | 5 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BsnI | GGCC | 1 cut(s) | 406 |
| Bsp120I | GGGCCC | 1 cut(s) | 404 |
| Bsp1286I | GDGCHC | 1 cut(s) | 408 |
| Bsp143I | GATC | 4 cut(s) | 27, 303, 313, 586 |
| BspACI | CCGC | 3 cut(s) | 266, 495, 514 |
| BspANI | GGCC | 1 cut(s) | 406 |
| BspHI | TCATGA | 1 cut(s) | 46 |
| BspLI | GGNNCC | 1 cut(s) | 406 |
| BspMAI | CTGCAG | 1 cut(s) | 484 |
| BspPI | GGATC | 2 cut(s) | 321, 594 |
| BspQI | GCTCTTC | 1 cut(s) | 369 |
| BssMI | GATC | 4 cut(s) | 27, 303, 313, 586 |
| BssNI | GRCGYC | 1 cut(s) | 342 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstACI | GRCGYC | 1 cut(s) | 342 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 463 |
| BstC8I | GCNNGC | 1 cut(s) | 389 |
| BstF5I | GGATG | 1 cut(s) | 200 |
| BstHHI | GCGC | 1 cut(s) | 387 |
| BstKTI | GATC | 4 cut(s) | 30, 306, 316, 589 |
| BstMBI | GATC | 4 cut(s) | 27, 303, 313, 586 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 463 |
| BstNSI | RCATGY | 2 cut(s) | 391, 461 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 54 |
| BstSFI | CTRYAG | 2 cut(s) | 168, 480 |
| BstSLI | GKGCMC | 1 cut(s) | 408 |
| BsuRI | GGCC | 1 cut(s) | 406 |
| BtgZI | GCGATG | 1 cut(s) | 309 |
| BtsCI | GGATG | 1 cut(s) | 200 |
| Cac8I | GCNNGC | 1 cut(s) | 389 |
| CciI | TCATGA | 1 cut(s) | 46 |
| CfoI | GCGC | 1 cut(s) | 387 |
| Cfr13I | GGNCC | 3 cut(s) | 56, 404, 405 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 547, 582 |
| CviAII | CATG | 6 cut(s) | 47, 191, 338, 388, 458, 503 |
| CviJI | RGCY | 2 cut(s) | 86, 406 |
| CviKI_1 | RGCY | 2 cut(s) | 86, 406 |
| DpnI | GATC | 4 cut(s) | 29, 305, 315, 588 |
| DpnII | GATC | 4 cut(s) | 27, 303, 313, 586 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| Eco24I | GRGCYC | 1 cut(s) | 408 |
| Eco47I | GGWCC | 1 cut(s) | 56 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 408 |
| FaeI | CATG | 6 cut(s) | 50, 194, 341, 391, 461, 506 |
| FaiI | YATR | 9 cut(s) | 48, 170, 192, 339, 389, 459, 504, 591, 593 |
| FatI | CATG | 6 cut(s) | 46, 190, 337, 387, 457, 502 |
| FauI | CCCGC | 1 cut(s) | 488 |
| FauNDI | CATATG | 1 cut(s) | 591 |
| FblI | GTMKAC | 1 cut(s) | 532 |
| FokI | GGATG | 1 cut(s) | 207 |
| FriOI | GRGCYC | 1 cut(s) | 408 |
| FspBI | CTAG | 2 cut(s) | 111, 120 |
| GlaI | GCGC | 1 cut(s) | 386 |
| GsaI | CCCAGC | 1 cut(s) | 90 |
| HaeIII | GGCC | 1 cut(s) | 406 |
| HapII | CCGG | 1 cut(s) | 5 |
| HhaI | GCGC | 1 cut(s) | 387 |
| Hin1I | GRCGYC | 1 cut(s) | 342 |
| Hin1II | CATG | 6 cut(s) | 50, 194, 341, 391, 461, 506 |
| Hin6I | GCGC | 1 cut(s) | 385 |
| HinP1I | GCGC | 1 cut(s) | 385 |
| HinfI | GANTC | 4 cut(s) | 15, 360, 473, 499 |
| HpaII | CCGG | 1 cut(s) | 5 |
| HphI | GGTGA | 2 cut(s) | 196, 255 |
| Hpy166II | GTNNAC | 1 cut(s) | 533 |
| Hpy188III | TCNNGA | 7 cut(s) | 47, 77, 120, 152, 317, 423, 440 |
| Hpy8I | GTNNAC | 1 cut(s) | 533 |
| Hpy99I | CGWCG | 1 cut(s) | 347 |
| HpyAV | CCTTC | 3 cut(s) | 108, 314, 446 |
| HpyCH4IV | ACGT | 1 cut(s) | 342 |
| HpyCH4V | TGCA | 3 cut(s) | 12, 482, 595 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 463 |
| HpySE526I | ACGT | 1 cut(s) | 342 |
| Hsp92I | GRCGYC | 1 cut(s) | 342 |
| Hsp92II | CATG | 6 cut(s) | 50, 194, 341, 391, 461, 506 |
| HspAI | GCGC | 1 cut(s) | 385 |
| Kzo9I | GATC | 4 cut(s) | 27, 303, 313, 586 |
| LguI | GCTCTTC | 1 cut(s) | 369 |
| LpnPI | CCDG | 4 cut(s) | 18, 72, 122, 492 |
| LweI | GCATC | 2 cut(s) | 428, 540 |
| MaeI | CTAG | 2 cut(s) | 111, 120 |
| MaeII | ACGT | 1 cut(s) | 342 |
| MalI | GATC | 4 cut(s) | 29, 305, 315, 588 |
| MboI | GATC | 4 cut(s) | 27, 303, 313, 586 |
| MboII | GAAGA | 4 cut(s) | 179, 203, 386, 482 |
| MhlI | GDGCHC | 1 cut(s) | 408 |
| MluCI | AATT | 5 cut(s) | 70, 161, 428, 523, 596 |
| MlyI | GAGTC | 1 cut(s) | 369 |
| MnlI | CCTC | 8 cut(s) | 73, 76, 159, 232, 241, 502, 563, 574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 127 |
| MslI | CAYNNNNRTG | 1 cut(s) | 51 |
| MspI | CCGG | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 463 |
| NdeI | CATATG | 1 cut(s) | 591 |
| NdeII | GATC | 4 cut(s) | 27, 303, 313, 586 |
| NlaIII | CATG | 6 cut(s) | 50, 194, 341, 391, 461, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 406 |
| NspI | RCATGY | 2 cut(s) | 391, 461 |
| PaeI | GCATGC | 1 cut(s) | 391 |
| PagI | TCATGA | 1 cut(s) | 46 |
| PciSI | GCTCTTC | 1 cut(s) | 369 |
| PdmI | GAANNNNTTC | 1 cut(s) | 127 |
| PfeI | GAWTC | 3 cut(s) | 15, 473, 499 |
| PleI | GAGTC | 1 cut(s) | 368 |
| PpsI | GAGTC | 1 cut(s) | 368 |
| PshAI | GACNNNNGTC | 1 cut(s) | 54 |
| PspFI | CCCAGC | 1 cut(s) | 86 |
| PspN4I | GGNNCC | 1 cut(s) | 406 |
| PspOMI | GGGCCC | 1 cut(s) | 404 |
| PspPI | GGNCC | 3 cut(s) | 56, 404, 405 |
| PstI | CTGCAG | 1 cut(s) | 484 |
| RseI | CAYNNNNRTG | 1 cut(s) | 51 |
| SapI | GCTCTTC | 1 cut(s) | 369 |
| Sau3AI | GATC | 4 cut(s) | 27, 303, 313, 586 |
| Sau96I | GGNCC | 3 cut(s) | 56, 404, 405 |
| SchI | GAGTC | 1 cut(s) | 369 |
| SduI | GDGCHC | 1 cut(s) | 408 |
| SetI | ASST | 5 cut(s) | 46, 100, 291, 345, 513 |
| SfaNI | GCATC | 2 cut(s) | 428, 540 |
| SfcI | CTRYAG | 2 cut(s) | 168, 480 |
| SinI | GGWCC | 1 cut(s) | 56 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 51 |
| SmlI | CTYRAG | 3 cut(s) | 39, 77, 150 |
| SmoI | CTYRAG | 3 cut(s) | 39, 77, 150 |
| SphI | GCATGC | 1 cut(s) | 391 |
| Sse9I | AATT | 5 cut(s) | 70, 161, 428, 523, 596 |
| SsiI | CCGC | 3 cut(s) | 266, 495, 514 |
| SspMI | CTAG | 2 cut(s) | 111, 120 |
| TaiI | ACGT | 1 cut(s) | 345 |
| TaqI | TCGA | 3 cut(s) | 18, 306, 424 |
| TaqII | GACCGA | 1 cut(s) | 340 |
| TasI | AATT | 5 cut(s) | 70, 161, 428, 523, 596 |
| TfiI | GAWTC | 3 cut(s) | 15, 473, 499 |
| TspDTI | ATGAA | 1 cut(s) | 179 |
| TspGWI | ACGGA | 2 cut(s) | 223, 326 |
| VpaK11BI | GGWCC | 1 cut(s) | 56 |
| XapI | RAATTY | 2 cut(s) | 161, 428 |
| XbaI | TCTAGA | 1 cut(s) | 119 |
| XceI | RCATGY | 2 cut(s) | 391, 461 |
| XmiI | GTMKAC | 1 cut(s) | 532 |
| XmnI | GAANNNNTTC | 1 cut(s) | 127 |
| XspI | CTAG | 2 cut(s) | 111, 120 |
| ZraI | GACGTC | 1 cut(s) | 343 |