RLG00000036216

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016970
Physical Location & Seq
Reverse (-)
77570436 .. 77570880
445 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036216

Sequence Viewer

Length: 351 bp
ATGCCTTCTCATCTCAATGATCTTGTCATGAGACGGATCGTTTCAACCCTTGGTTTGAGGAATGGTGGGTTGCCTTTGCGGCAATGCTCGGAATTGGAGGATTTTCGATGGCGGAGCCGGGCGGGTGCTTGCGGCGGTGAAGTGTGGTGGCCGGTTGCTGTCGGAGTTGTCGAGGTGGCCAGTGACGGTCATGTTGCAGTCGGCGATAGAGCAACTAGTTTGGATGGGTTGTCTTCAGGCAGGTCGTTGGACCTTTCTCTGGTGGGGGTACTGGGTGCAGGTGGTGTAGGGGATGGGGTAAGGAAGACGATTAACCCTGTCTCGGGTGTCCACAACAGTTCGGACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.06

Weight (kDa)

6.25

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 2 cut(s) 231, 269
AciI CCGC 5 cut(s) 79, 112, 122, 132, 135
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 2 cut(s) 149, 177
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 259, 322, 323
AgsI TTSAA 1 cut(s) 45
AhlI ACTAGT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 25, 325
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 2 cut(s) 149, 177
AspS9I GGNCC 2 cut(s) 250, 343
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 2 cut(s) 250, 343
BalI TGGCCA 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 225, 311
BccI CCATC 3 cut(s) 102, 218, 287
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 25, 325
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BfuAI ACCTGC 2 cut(s) 231, 269
BglI GCCNNNNNGGC 1 cut(s) 79
BisI GCNGC 2 cut(s) 80, 133
BlsI GCNGC 2 cut(s) 81, 134
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 250, 343
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 250, 343
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 281
BpiI GAAGAC 2 cut(s) 225, 311
BpuMI CCSGG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 322, 323
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 180, 276
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 2 cut(s) 229, 298
BseLI CCNNNNNNNGG 3 cut(s) 259, 322, 323
BseMI GCAATG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 180, 276
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 2 cut(s) 151, 179
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 118, 152
BslI CCNNNNNNNGG 3 cut(s) 259, 322, 323
BsmAI GTCTC 2 cut(s) 25, 325
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 151, 179
BsoBI CYCGRG 1 cut(s) 322
Bsp143I GATC 2 cut(s) 19, 36
BspACI CCGC 5 cut(s) 79, 112, 122, 132, 135
BspANI GGCC 2 cut(s) 151, 179
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 116
BspMI ACCTGC 2 cut(s) 231, 269
BspPI GGATC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 2 cut(s) 180, 276
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 19, 36
BssT1I CCWWGG 1 cut(s) 49
Bst4CI ACNGT 2 cut(s) 188, 338
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 2 cut(s) 229, 298
BstKTI GATC 2 cut(s) 22, 39
BstMAI GTCTC 2 cut(s) 25, 325
BstMBI GATC 2 cut(s) 19, 36
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 117
BstV2I GAAGAC 2 cut(s) 225, 311
BsuRI GGCC 2 cut(s) 151, 179
BtsCI GGATG 2 cut(s) 229, 298
BtsIMutI CAGTG 1 cut(s) 187
BveI ACCTGC 2 cut(s) 231, 269
Cac8I GCNNGC 1 cut(s) 130
CciI TCATGA 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 250, 343
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 28, 191
CviJI RGCY 3 cut(s) 117, 151, 179
CviKI_1 RGCY 3 cut(s) 117, 151, 179
CviQI GTAC 1 cut(s) 269
DpnI GATC 2 cut(s) 21, 38
DpnII GATC 2 cut(s) 19, 36
EaeI YGGCCR 2 cut(s) 149, 177
EciI GGCGGA 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 250, 343
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 2 cut(s) 31, 194
FaiI YATR 2 cut(s) 29, 192
FatI CATG 2 cut(s) 27, 190
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 80, 133
FokI GGATG 2 cut(s) 236, 305
Fsp4HI GCNGC 2 cut(s) 80, 133
FspBI CTAG 1 cut(s) 216
GluI GCNGC 2 cut(s) 80, 133
HaeIII GGCC 2 cut(s) 151, 179
HapII CCGG 2 cut(s) 118, 152
Hin1II CATG 2 cut(s) 31, 194
HpaII CCGG 2 cut(s) 118, 152
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 91, 164, 343
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 188, 338
HpyCH4V TGCA 2 cut(s) 197, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 31, 194
Kzo9I GATC 2 cut(s) 19, 36
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 9 cut(s) 131, 165, 193, 222, 226, 245, 257, 264, 330
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 21, 38
MboI GATC 2 cut(s) 19, 36
MboII GAAGA 2 cut(s) 225, 316
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 92
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 142, 228
MnlI CCTC 3 cut(s) 51, 91, 166
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 2 cut(s) 118, 152
MspR9I CCNGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 119
NdeII GATC 2 cut(s) 19, 36
NlaIII CATG 2 cut(s) 31, 194
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 182
PagI TCATGA 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PkrI GCNGC 2 cut(s) 81, 134
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 250, 343
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 2 cut(s) 80, 133
Sau3AI GATC 2 cut(s) 19, 36
Sau96I GGNCC 2 cut(s) 250, 343
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 177, 245, 255, 283, 348
SinI GGWCC 2 cut(s) 250, 343
SmiMI CAYNNNNRTG 1 cut(s) 15
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 1 cut(s) 92
SsiI CCGC 5 cut(s) 79, 112, 122, 132, 135
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 188, 338
TaqI TCGA 2 cut(s) 106, 171
TasI AATT 1 cut(s) 92
TauI GCSGC 2 cut(s) 82, 135
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 250, 343
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.