Rmu_sc0003636.1_g000001

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003636.1
Physical Location & Seq
Reverse (-)
2 .. 3673
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003636.1_g000001.1.cds

Sequence Viewer

Length: 1635 bp
atgatgattgggctgggcgacttctggccacgacctaagcgtgggcgtctcctgcggcgtcctcgttttctggtgagttttttctggatagggtcgatcttgacctcagtttcgggactgctggtattgctcacagctatggggataggcggcgttagtctcctaccgctgggactggcgaaggtgtttcagggaggtggtggatctctgagttggcggtcgggaagatcgaagacagcgccgtgcgggaggctgccacgatgggtgtctagatctttctgggctacctggctttcagactatcttcaggcccatctcacagatttggtaggccagctctatccatgggtgtggatttgggacccaggggaccttttattgggtcttttgctgaactgtgccattttcattcctctgggtgtgctgttattgctctgttctttatgctgggatgagtctagtattgattggtctgccaatcctttacatgcccagattgctgattctgatggttggatctacaaatctcaaggtcgtgacaatagttttgttgttggtaattatcttgaggaggctggagatttaccttcagtttatgctaggttctctaggaaagttttagagcattgttttattgtacaaggacaattgcccattcattgtcgctatgcgacaagcgcttgctgcacacgcaaaagccagttgcggcgctacgcgtcagctcgttgtcatccacttccttcttttagtgcgtctccttctccacacccgtggttgacgtcacccataaggccttctgggccgagctggcagctggacaagttgggtcaagcaaaatgtcaaggccttgacatttttcttggcttcggtcaagaaagggtgggttttggctggtcaaaagtccaacgatttactggtcgcatagagggactttattttggccatgccccaacttcaatcactttcaatccaaatcttgcagacgggtgcaaagtcactcaggaatccaccaatacacttatccatccagctaacttagaatatccaagtgatttgagtaagtctttgagcccagcttctgaggaagaaactgttgatgttagttactccaacaatcctgttatcaagtacataagtgatattcttctggaggaagacctggaggacgagagcttcatgctgcaggactatttggccgtccaagctgctgaaaaatctttctatgatgtccttaatccgaatgatcctcattcacccaacaaggcttctcttcgtgaatcgttttcagatactcttttggtttcagattcactttttgagaggcagagtcttggaaatttcggaaatgttggggaggcagacaagttccttcctaatggggaattcgatatcattgacaatgagaggtacgaattactgcctgcagcacgttctcacctggtgaaagggaatctggcatccgataaaaaaaatgatgtaaataacccaacaaatggtatgaagggaaagaaaaatcatcacagagaggatggagattatccagaggaagggagacgcagcaagcagtcagttgtttctgctgatgactctgagcctcaagaaatgtttgataaggtgttactctgtcaagctgag

Protein Analysis

545

Amino Acids

60.71

Weight (kDa)

5.8

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 1493
AccII CGCG 1 cut(s) 716
AciI CCGC 6 cut(s) 55, 150, 167, 217, 246, 706
AclWI GGATC 3 cut(s) 211, 524, 1238
AcoI YGGCCR 3 cut(s) 26, 940, 1194
AcsI RAATTY 2 cut(s) 1336, 1382
AcuI CTGAAG 2 cut(s) 290, 573
AcyI GRCGYC 3 cut(s) 46, 58, 779
AdeI CACNNNGTG 1 cut(s) 1441
AfaI GTAC 3 cut(s) 639, 1130, 1409
AfeI AGCGCT 1 cut(s) 679
AfiI CCNNNNNNNGG 5 cut(s) 41, 169, 379, 1493, 1547
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 2 cut(s) 957, 967
AjnI CCWGG 4 cut(s) 287, 364, 1158, 1437
AleI CACNNNNGTG 1 cut(s) 769
Alw26I GTCTC 4 cut(s) 53, 164, 759, 1546
AlwI GGATC 3 cut(s) 211, 524, 1238
AlwNI CAGNNNCTG 1 cut(s) 1079
Aor51HI AGCGCT 1 cut(s) 679
AoxI GGCC 8 cut(s) 26, 309, 331, 791, 800, 844, 940, 1194
ApeKI GCWGC 7 cut(s) 253, 684, 811, 1180, 1205, 1424, 1557
ApoI RAATTY 2 cut(s) 1336, 1382
ArsI GACNNNNNNTTYG 4 cut(s) 94, 126, 530, 562
AspLEI GCGC 3 cut(s) 241, 680, 711
AspS9I GGNCC 4 cut(s) 310, 361, 370, 800
AsuHPI GGTGA 5 cut(s) 85, 774, 1245, 1427, 1453
AvaII GGWCC 2 cut(s) 361, 370
BalI TGGCCA 2 cut(s) 28, 942
BanII GRGCYC 1 cut(s) 1073
BbsI GAAGAC 2 cut(s) 239, 1161
BbvI GCAGC 7 cut(s) 240, 671, 823, 1167, 1192, 1436, 1569
BccI CCATC 5 cut(s) 255, 321, 503, 1032, 1523
BceAI ACGGC 2 cut(s) 226, 1181
BciT130I CCWGG 4 cut(s) 289, 366, 1160, 1439
BcoDI GTCTC 4 cut(s) 53, 164, 759, 1546
BfaI CTAG 4 cut(s) 270, 459, 600, 609
BfmI CTRYAG 2 cut(s) 1181, 1422
BfoI RGCGCY 3 cut(s) 242, 681, 712
BglI GCCNNNNNGGC 2 cut(s) 799, 808
BglII AGATCT 1 cut(s) 272
Bme1390I CCNGG 4 cut(s) 289, 366, 1160, 1439
Bme18I GGWCC 2 cut(s) 361, 370
BmgT120I GGNCC 4 cut(s) 310, 361, 370, 800
BmiI GGNNCC 3 cut(s) 362, 363, 371
BmrFI CCNGG 4 cut(s) 289, 366, 1160, 1439
BmsI GCATC 1 cut(s) 1466
BpiI GAAGAC 2 cut(s) 239, 1161
BpmI CTGGAG 3 cut(s) 597, 1169, 1181
Bpu10I CCTNAGC 1 cut(s) 36
BpuEI CTTGAG 3 cut(s) 513, 587, 1581
BsaHI GRCGYC 3 cut(s) 46, 58, 779
BsaJI CCNNGG 4 cut(s) 344, 364, 365, 770
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 169, 379, 1493, 1547
Bse1I ACTGG 3 cut(s) 180, 700, 919
BseBI CCWGG 4 cut(s) 289, 366, 1160, 1439
BseDI CCNNGG 4 cut(s) 344, 364, 365, 770
BseGI GGATG 5 cut(s) 457, 730, 1024, 1457, 1534
BseLI CCNNNNNNNGG 5 cut(s) 41, 169, 379, 1493, 1547
BseMII CTCAG 6 cut(s) 120, 200, 1013, 1071, 1581, 1623
BseNI ACTGG 3 cut(s) 180, 700, 919
BseRI GAGGAG 1 cut(s) 584
BseXI GCAGC 7 cut(s) 240, 671, 823, 1167, 1192, 1436, 1569
BseYI CCCAGC 4 cut(s) 13, 169, 447, 1072
BsgI GTGCAG 1 cut(s) 670
Bsh1236I CGCG 1 cut(s) 716
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 8 cut(s) 28, 311, 333, 793, 802, 846, 942, 1196
BsiEI CGRYCG 1 cut(s) 221
BslFI GGGAC 5 cut(s) 129, 186, 374, 383, 942
BslI CCNNNNNNNGG 5 cut(s) 41, 169, 379, 1493, 1547
BsmAI GTCTC 4 cut(s) 53, 164, 759, 1546
BsmBI CGTCTC 3 cut(s) 53, 759, 1546
BsmFI GGGAC 5 cut(s) 129, 186, 374, 383, 942
BsnI GGCC 8 cut(s) 28, 311, 333, 793, 802, 846, 942, 1196
Bsp1286I GDGCHC 1 cut(s) 1073
Bsp1407I TGTACA 1 cut(s) 637
Bsp143I GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 6 cut(s) 55, 150, 167, 217, 246, 706
BspANI GGCC 8 cut(s) 28, 311, 333, 793, 802, 846, 942, 1196
BspCNI CTCAG 6 cut(s) 119, 201, 1012, 1072, 1582, 1624
BspFNI CGCG 1 cut(s) 716
BspLI GGNNCC 3 cut(s) 362, 363, 371
BspMAI CTGCAG 2 cut(s) 1185, 1426
BspPI GGATC 3 cut(s) 211, 524, 1238
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 3 cut(s) 180, 700, 919
BssECI CCNNGG 4 cut(s) 344, 364, 365, 770
BssMI GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
BssNI GRCGYC 3 cut(s) 46, 58, 779
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 4 cut(s) 289, 366, 1160, 1439
Bst4CI ACNGT 2 cut(s) 398, 1093
Bst6I CTCTTC 1 cut(s) 1275
BstACI GRCGYC 3 cut(s) 46, 58, 779
BstAUI TGTACA 1 cut(s) 637
BstC8I GCNNGC 5 cut(s) 335, 682, 809, 1422, 1562
BstDEI CTNAG 8 cut(s) 36, 106, 209, 999, 1036, 1080, 1590, 1632
BstDSI CCRYGG 2 cut(s) 344, 770
BstF5I GGATG 5 cut(s) 457, 730, 1024, 1457, 1534
BstFNI CGCG 1 cut(s) 716
BstH2I RGCGCY 3 cut(s) 242, 681, 712
BstHHI GCGC 3 cut(s) 241, 680, 711
BstKTI GATC 6 cut(s) 99, 206, 230, 275, 519, 1246
BstMAI GTCTC 4 cut(s) 53, 164, 759, 1546
BstMBI GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
BstMCI CGRYCG 1 cut(s) 221
BstNI CCWGG 4 cut(s) 289, 366, 1160, 1439
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 4 cut(s) 287, 364, 1158, 1437
BstSFI CTRYAG 2 cut(s) 1181, 1422
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 7 cut(s) 240, 671, 823, 1167, 1192, 1436, 1569
BstV2I GAAGAC 2 cut(s) 239, 1161
BstX2I RGATCY 3 cut(s) 203, 272, 516
BstXI CCANNNNNNTGG 2 cut(s) 351, 771
BstYI RGATCY 3 cut(s) 203, 272, 516
BsuRI GGCC 8 cut(s) 28, 311, 333, 793, 802, 846, 942, 1196
BtgI CCRYGG 2 cut(s) 344, 770
BtsCI GGATG 5 cut(s) 457, 730, 1024, 1457, 1534
Cac8I GCNNGC 5 cut(s) 335, 682, 809, 1422, 1562
CaiI CAGNNNCTG 1 cut(s) 1079
CfoI GCGC 3 cut(s) 241, 680, 711
Cfr13I GGNCC 4 cut(s) 310, 361, 370, 800
CseI GACGC 5 cut(s) 35, 47, 705, 741, 1563
CsiI ACCWGGT 1 cut(s) 1437
Csp6I GTAC 3 cut(s) 638, 1129, 1408
CviAII CATG 4 cut(s) 345, 488, 944, 1177
CviQI GTAC 3 cut(s) 638, 1129, 1408
DdeI CTNAG 8 cut(s) 36, 106, 209, 999, 1036, 1080, 1590, 1632
DpnI GATC 6 cut(s) 98, 205, 229, 274, 518, 1245
DpnII GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
DraIII CACNNNGTG 1 cut(s) 1441
EaeI YGGCCR 3 cut(s) 26, 940, 1194
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
Eco130I CCWWGG 1 cut(s) 344
Eco147I AGGCCT 2 cut(s) 793, 846
Eco24I GRGCYC 1 cut(s) 1073
Eco32I GATATC 1 cut(s) 1390
Eco47I GGWCC 2 cut(s) 361, 370
Eco47III AGCGCT 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 290, 573
EcoO109I RGGNCCY 2 cut(s) 361, 370
EcoRI GAATTC 1 cut(s) 1382
EcoRII CCWGG 4 cut(s) 287, 364, 1158, 1437
EcoRV GATATC 1 cut(s) 1390
EcoT14I CCWWGG 1 cut(s) 344
EcoT38I GRGCYC 1 cut(s) 1073
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 3 cut(s) 53, 759, 1546
FaeI CATG 4 cut(s) 348, 491, 947, 1180
FaqI GGGAC 5 cut(s) 129, 186, 374, 383, 942
FatI CATG 4 cut(s) 344, 487, 943, 1176
FauI CCCGC 1 cut(s) 239
FokI GGATG 5 cut(s) 464, 717, 1011, 1444, 1541
FriOI GRGCYC 1 cut(s) 1073
FspBI CTAG 4 cut(s) 270, 459, 600, 609
GlaI GCGC 3 cut(s) 240, 679, 710
GsaI CCCAGC 4 cut(s) 17, 173, 451, 1076
GsuI CTGGAG 3 cut(s) 597, 1169, 1181
HaeII RGCGCY 3 cut(s) 242, 681, 712
HaeIII GGCC 8 cut(s) 28, 311, 333, 793, 802, 846, 942, 1196
HgaI GACGC 5 cut(s) 35, 47, 705, 741, 1563
HhaI GCGC 3 cut(s) 241, 680, 711
Hin1I GRCGYC 3 cut(s) 46, 58, 779
Hin1II CATG 4 cut(s) 348, 491, 947, 1180
Hin6I GCGC 3 cut(s) 239, 678, 709
HinP1I GCGC 3 cut(s) 239, 678, 709
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HinfI GANTC 8 cut(s) 455, 503, 1004, 1277, 1307, 1327, 1450, 1586
HphI GGTGA 5 cut(s) 85, 774, 1245, 1427, 1453
Hpy166II GTNNAC 1 cut(s) 777
Hpy8I GTNNAC 1 cut(s) 777
HpyAV CCTTC 8 cut(s) 175, 597, 750, 768, 804, 1379, 1495, 1541
HpyCH4III ACNGT 2 cut(s) 398, 1093
HpyCH4IV ACGT 2 cut(s) 779, 1429
HpyCH4V TGCA 5 cut(s) 687, 980, 990, 1183, 1424
HpyF3I CTNAG 8 cut(s) 36, 106, 209, 999, 1036, 1080, 1590, 1632
HpySE526I ACGT 2 cut(s) 779, 1429
Hsp92I GRCGYC 3 cut(s) 46, 58, 779
Hsp92II CATG 4 cut(s) 348, 491, 947, 1180
HspAI GCGC 3 cut(s) 239, 678, 709
KflI GGGWCCC 1 cut(s) 361
Kzo9I GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
Lsp1109I GCAGC 7 cut(s) 240, 671, 823, 1167, 1192, 1436, 1569
LweI GCATC 1 cut(s) 1466
MabI ACCWGGT 1 cut(s) 1437
MaeI CTAG 4 cut(s) 270, 459, 600, 609
MaeII ACGT 2 cut(s) 779, 1429
MaeIII GTNAC 5 cut(s) 536, 780, 994, 1103, 1617
MalI GATC 6 cut(s) 98, 205, 229, 274, 518, 1245
MboI GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
MboII GAAGA 7 cut(s) 237, 244, 296, 1097, 1136, 1166, 1262
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 3 cut(s) 203, 272, 516
MhlI GDGCHC 1 cut(s) 1073
MlsI TGGCCA 2 cut(s) 28, 942
MluCI AATT 5 cut(s) 559, 647, 1336, 1382, 1412
MluI ACGCGT 1 cut(s) 714
MluNI TGGCCA 2 cut(s) 28, 942
MlyI GAGTC 3 cut(s) 464, 1336, 1580
MmeI TCCRAC 3 cut(s) 494, 928, 1134
Mox20I TGGCCA 2 cut(s) 28, 942
MscI TGGCCA 2 cut(s) 28, 942
MseI TTAA 1 cut(s) 1233
MslI CAYNNNNRTG 3 cut(s) 137, 349, 769
Msp20I TGGCCA 2 cut(s) 28, 942
MspA1I CMGCKG 2 cut(s) 169, 814
MspR9I CCNGG 4 cut(s) 289, 366, 1160, 1439
MunI CAATTG 1 cut(s) 647
MvaI CCWGG 4 cut(s) 289, 366, 1160, 1439
MvnI CGCG 1 cut(s) 716
NcoI CCATGG 1 cut(s) 344
NdeII GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
NlaIII CATG 4 cut(s) 348, 491, 947, 1180
NlaIV GGNNCC 3 cut(s) 362, 363, 371
NmeAIII GCCGAG 1 cut(s) 828
NmuCI GTSAC 3 cut(s) 536, 780, 994
NspI RCATGY 1 cut(s) 491
OliI CACNNNNGTG 1 cut(s) 769
PasI CCCWGGG 1 cut(s) 365
PceI AGGCCT 2 cut(s) 793, 846
PcsI WCGNNNNNNNCGW 2 cut(s) 37, 227
PfeI GAWTC 5 cut(s) 503, 1004, 1277, 1307, 1450
PflMI CCANNNNNTGG 1 cut(s) 1493
PleI GAGTC 3 cut(s) 463, 1335, 1580
PpsI GAGTC 3 cut(s) 463, 1335, 1580
PpuMI RGGWCCY 2 cut(s) 361, 370
Psp5II RGGWCCY 2 cut(s) 361, 370
Psp6I CCWGG 4 cut(s) 287, 364, 1158, 1437
PspFI CCCAGC 4 cut(s) 13, 169, 447, 1072
PspGI CCWGG 4 cut(s) 287, 364, 1158, 1437
PspN4I GGNNCC 3 cut(s) 362, 363, 371
PspPI GGNCC 4 cut(s) 310, 361, 370, 800
PspPPI RGGWCCY 2 cut(s) 361, 370
PstI CTGCAG 2 cut(s) 1185, 1426
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 3 cut(s) 203, 272, 516
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 3 cut(s) 639, 1130, 1409
RsaNI GTAC 3 cut(s) 638, 1129, 1408
RseI CAYNNNNRTG 3 cut(s) 137, 349, 769
SaqAI TTAA 1 cut(s) 1233
Sau3AI GATC 6 cut(s) 96, 203, 227, 272, 516, 1243
Sau96I GGNCC 4 cut(s) 310, 361, 370, 800
SchI GAGTC 3 cut(s) 464, 1336, 1580
ScrFI CCNGG 4 cut(s) 289, 366, 1160, 1439
SduI GDGCHC 1 cut(s) 1073
SexAI ACCWGGT 1 cut(s) 1437
SfaNI GCATC 1 cut(s) 1466
SfcI CTRYAG 2 cut(s) 1181, 1422
SfiI GGCCNNNNNGGCC 1 cut(s) 799
SinI GGWCC 2 cut(s) 361, 370
SmiMI CAYNNNNRTG 3 cut(s) 137, 349, 769
SmlI CTYRAG 3 cut(s) 528, 566, 1596
SmoI CTYRAG 3 cut(s) 528, 566, 1596
Sse9I AATT 5 cut(s) 559, 647, 1336, 1382, 1412
SseBI AGGCCT 2 cut(s) 793, 846
SsiI CCGC 6 cut(s) 55, 150, 167, 217, 246, 706
SspMI CTAG 4 cut(s) 270, 459, 600, 609
StuI AGGCCT 2 cut(s) 793, 846
StyD4I CCNGG 4 cut(s) 287, 364, 1158, 1437
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 398, 1093
TaiI ACGT 2 cut(s) 782, 1432
TaqI TCGA 3 cut(s) 95, 230, 1386
TaqII GACCGA 1 cut(s) 857
TasI AATT 5 cut(s) 559, 647, 1336, 1382, 1412
TatI WGTACW 2 cut(s) 637, 1128
TauI GCSGC 3 cut(s) 58, 153, 709
TfiI GAWTC 5 cut(s) 503, 1004, 1277, 1307, 1450
Tru1I TTAA 1 cut(s) 1233
Tru9I TTAA 1 cut(s) 1233
TseFI GTSAC 3 cut(s) 536, 780, 994
TseI GCWGC 7 cut(s) 253, 684, 811, 1180, 1205, 1424, 1557
Tsp45I GTSAC 3 cut(s) 536, 780, 994
TspDTI ATGAA 4 cut(s) 397, 647, 1165, 1514
Van91I CCANNNNNTGG 1 cut(s) 1493
VpaK11BI GGWCC 2 cut(s) 361, 370
XapI RAATTY 2 cut(s) 1336, 1382
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XspI CTAG 4 cut(s) 270, 459, 600, 609
ZraI GACGTC 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.