RchiOBHm_Chr3g0469761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016970
Physical Location & Seq
Reverse (-)
15639003 .. 15640122
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43559

Sequence Viewer

Length: 312 bp
ATGGTCTCTGATTTGGTCGCTGGGAGCCTGGGATGGAGGCAGACGACGTCTGGCGGCGGGTGGCTGTTGAGTCTGGGTGCCCTACTTTGGGTGTCTAGATCATTCAGGGGTTCCCAGATTTTGGGCTGCTATTGGGCCTATATCACTCGTTTGGCCCATTTTCACCATTTAGTGGGCCATACCCCTTCATGGGTCTGGATTTGGGACCCAAGAAACCTTCTACCGGGTTTTTGTGCCCCGCTGAGACTCTTCTATCCTGTAGCTAGAGGCTCGGTTTCTAGCCCTAGAGATAAGGGCAAAGGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.48

Weight (kDa)

10.58

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 2 cut(s) 121, 172
AciI CCGC 3 cut(s) 54, 57, 239
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 7 cut(s) 87, 88, 121, 172, 189, 190, 223
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 263, 307
AluI AGCT 2 cut(s) 263, 307
Alw26I GTCTC 2 cut(s) 10, 238
AoxI GGCC 3 cut(s) 135, 153, 175
ApeKI GCWGC 1 cut(s) 126
AspS9I GGNCC 4 cut(s) 135, 154, 175, 205
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 2 cut(s) 82, 238
BanI GGYRCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 10, 238
BfaI CTAG 4 cut(s) 96, 264, 279, 285
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 2 cut(s) 55, 127
BlsI GCNGC 2 cut(s) 56, 128
Bme1390I CCNGG 2 cut(s) 29, 225
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 4 cut(s) 135, 154, 175, 205
BmiI GGNNCC 5 cut(s) 26, 79, 112, 206, 207
BmrFI CCNGG 2 cut(s) 29, 225
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 7 cut(s) 87, 88, 121, 172, 189, 190, 223
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 7 cut(s) 87, 88, 121, 172, 189, 190, 223
BseMII CTCAG 1 cut(s) 233
BseSI GKGCMC 2 cut(s) 82, 238
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 3 cut(s) 137, 155, 177
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 7 cut(s) 87, 88, 121, 172, 189, 190, 223
BsmAI GTCTC 2 cut(s) 10, 238
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 137, 155, 177
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 82, 238
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 3 cut(s) 54, 57, 239
BspANI GGCC 3 cut(s) 137, 155, 177
BspCNI CTCAG 1 cut(s) 234
BspLI GGNNCC 5 cut(s) 26, 79, 112, 206, 207
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 98
BssNI GRCGYC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 10, 238
BstMBI GATC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 223
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 2 cut(s) 82, 238
BstV1I GCAGC 1 cut(s) 113
BsuRI GGCC 3 cut(s) 137, 155, 177
BtsCI GGATG 1 cut(s) 38
Cfr13I GGNCC 4 cut(s) 135, 154, 175, 205
CviAII CATG 1 cut(s) 189
DdeI CTNAG 1 cut(s) 242
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 192
FaiI YATR 3 cut(s) 141, 180, 190
FalI AAGNNNNNCTT 1 cut(s) 291
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 188
FauI CCCGC 2 cut(s) 50, 246
Fnu4HI GCNGC 2 cut(s) 55, 127
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 55, 127
FspBI CTAG 4 cut(s) 96, 264, 279, 285
GluI GCNGC 2 cut(s) 55, 127
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 3 cut(s) 137, 155, 177
HapII CCGG 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 2 cut(s) 70, 246
HpaII CCGG 1 cut(s) 224
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 96, 196
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 195, 227
HpyCH4IV ACGT 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 192
KflI GGGWCCC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 4 cut(s) 96, 264, 279, 285
MaeII ACGT 1 cut(s) 47
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 82, 238
MlyI GAGTC 2 cut(s) 79, 240
MnlI CCTC 2 cut(s) 30, 260
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 29, 225
MvaI CCWGG 1 cut(s) 29
NciI CCSGG 1 cut(s) 225
NdeII GATC 1 cut(s) 98
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 5 cut(s) 26, 79, 112, 206, 207
PflFI GACNNNGTC 1 cut(s) 46
PflMI CCANNNNNTGG 2 cut(s) 121, 172
PkrI GCNGC 2 cut(s) 56, 128
PleI GAGTC 2 cut(s) 78, 240
PpsI GAGTC 2 cut(s) 78, 240
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 5 cut(s) 26, 79, 112, 206, 207
PspPI GGNCC 4 cut(s) 135, 154, 175, 205
PspPPI RGGWCCY 1 cut(s) 205
PsyI GACNNNGTC 1 cut(s) 46
SatI GCNGC 2 cut(s) 55, 127
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 4 cut(s) 135, 154, 175, 205
SchI GAGTC 2 cut(s) 79, 240
ScrFI CCNGG 2 cut(s) 29, 225
SduI GDGCHC 2 cut(s) 82, 238
SetI ASST 4 cut(s) 50, 219, 265, 309
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 205
SsiI CCGC 3 cut(s) 54, 57, 239
SspMI CTAG 4 cut(s) 96, 264, 279, 285
StyD4I CCNGG 2 cut(s) 27, 223
TaiI ACGT 1 cut(s) 50
TauI GCSGC 1 cut(s) 57
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 177
Tth111I GACNNNGTC 1 cut(s) 46
Van91I CCANNNNNTGG 2 cut(s) 121, 172
VpaK11BI GGWCC 1 cut(s) 205
XbaI TCTAGA 1 cut(s) 95
XspI CTAG 4 cut(s) 96, 264, 279, 285
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.