RLG00000018290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016970
Physical Location & Seq
Forward (+)
27986855 .. 27987354
500 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018290

Sequence Viewer

Length: 396 bp
ATGGCAGTGCTTGGTTGTTGGTTTCACTGTGGGAACCAGGCAATTGATTGTGGTGGTTCAGTGAGGTGGTTGAGCCTTGATTTGGATAGTACTGATGCTATCGATGTCGGAGTTAGCGTGGTGGCTGGTGATGATGGTCATACTGCAATCGGCGTCGAAGCCGCTGGCTTAGATGGTCTGTCTTCAAGAAGGCTGCTGGAGCTTCTTCTGGTGGCAGTGCTGGGTGCAGATGGTGTAGGGGAAAGGAGAAGGACAACAGTAGTCTTCGATTTGGGTGTCCTGATTTGGACTGTTGTAAGGCCCACACCACTATTCTGTTTAGCCAGCTCTCCCTATAGGCCTAGCTTTGGGATCCAAGAGGTTAGCCCTAAAGATAAGGGCAAAAGGAAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.88

Weight (kDa)

5.58

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AclWI GGATC 2 cut(s) 346, 359
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 2 cut(s) 82, 347
AgsI TTSAA 1 cut(s) 186
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 4 cut(s) 202, 327, 345, 391
AluI AGCT 4 cut(s) 202, 327, 345, 391
AlwI GGATC 2 cut(s) 346, 359
AoxI GGCC 2 cut(s) 299, 338
ApeKI GCWGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 140
BamHI GGATCC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 174, 256
BbvI GCAGC 1 cut(s) 180
BccI CCATC 3 cut(s) 128, 167, 224
BciT130I CCWGG 1 cut(s) 38
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 334
BisI GCNGC 2 cut(s) 162, 194
BlsI GCNGC 2 cut(s) 163, 195
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 2 cut(s) 35, 353
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 174, 256
BpmI CTGGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 347
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 82, 347
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 2 cut(s) 301, 340
BshVI ATCGAT 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 82, 347
BsnI GGCC 2 cut(s) 301, 340
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 301, 340
BspDI ATCGAT 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 35, 353
BspPI GGATC 2 cut(s) 346, 359
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 29, 259, 292
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 166, 325
BstDEI CTNAG 1 cut(s) 169
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 174, 256
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 301, 340
BsuTUI ATCGAT 1 cut(s) 102
BtsI GCAGTG 2 cut(s) 12, 222
BtsIMutI CAGTG 4 cut(s) 12, 25, 66, 222
Cac8I GCNNGC 2 cut(s) 166, 325
Cfr13I GGNCC 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 90
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 36
FaiI YATR 2 cut(s) 141, 336
Fnu4HI GCNGC 2 cut(s) 162, 194
Fsp4HI GCNGC 2 cut(s) 162, 194
FspBI CTAG 1 cut(s) 342
GluI GCNGC 2 cut(s) 162, 194
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 2 cut(s) 301, 340
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 153
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 186, 280
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 183, 243
HpyCH4III ACNGT 3 cut(s) 29, 259, 292
HpyCH4V TGCA 2 cut(s) 146, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 169
Hsp92I GRCGYC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 23, 50, 111, 150, 182, 194, 206, 293, 337
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 342
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 3 cut(s) 174, 197, 256
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 351
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 2 cut(s) 57, 352
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 1 cut(s) 351
NlaIV GGNNCC 2 cut(s) 35, 353
PceI AGGCCT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PkrI GCNGC 2 cut(s) 163, 195
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 35, 353
PspPI GGNCC 1 cut(s) 300
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SatI GCNGC 2 cut(s) 162, 194
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 300
ScaI AGTACT 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 38
SetI ASST 6 cut(s) 68, 204, 329, 347, 363, 393
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 334
Sse9I AATT 1 cut(s) 42
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 342
StuI AGGCCT 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 29, 259, 292
TaqI TCGA 3 cut(s) 102, 156, 267
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 164
TscAI CASTG 4 cut(s) 12, 32, 66, 222
TseI GCWGC 1 cut(s) 193
TspRI CASTG 4 cut(s) 12, 32, 66, 222
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.