RchiOBHm_Chr1g0350891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016970
Physical Location & Seq
Forward (+)
44037003 .. 44037986
984 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57672

Sequence Viewer

Length: 963 bp
ATGGCAGATCTCCTTTGCCTTTCTTTTGGATCGCGAGAGCGGCCACGGAGAGGGCGGCTGAAGGGTGGGCTTCGGTTCCGGTATGGTGGATCTCGGATAAACCGGTCGAGATGGATGGCGGCGCTGCTGAGCGGTGGCTGGGTTCTTCTCTGGTGGGTAGCCTTGATGCGGTCGATGTCGGAGAAACTGGTATGGCCTGGGTTGGAGGCGATCTTACGCAGCCGCGCCTGGAGATTCTGCCTTGGGTTGATCGAACTCTGGGTTTCGCCCTTCGAACTCCAGTTTGTGATGCGGACGGTGGTGTTGCAGGGAGACCGAGGATGCCTGAAGTGGTGGTCGGCCGGGGCACAGATGAAGGGTGCCCGATCTTGGGTGTCCAGATCAGATCGAGCTTCTATGAATTTGGGCTGCTTCTGGGCCCAGTTCAACTTTCTGTTGGGCCAGACCTCTCCAAGGGTCTGGATTTGGGACCCAGGAGACCTTCGATCTGGTTGCTGTTTCAGTTTTGCTACGTGTAATATTTTGGGTGTGATGCGCTTACTCTTGGGTAAATTGATCATTGCTACATTCTATGAAGAGTCTCAGTACAATCGCGTTGTGAGTACCACAATTGAGTGCCTTGGCGAGCAGTGTGTTTTAGGCTGGGATGAATTTAGTTTTGATTGGTCTACCAATTCCTTGCATACCCGAATTGCAGATACTGATGATTTGCTCTACAAATCTCAAGGTCATGACAATGGTGCTATTGTTGGTAATTATCTTGAGGAGGCTGGGATTATATCTTCAGTTTTTGCTAAGTTCTCTATTAGTGCTTCAGAGCAATGTTTTATTGTAAAAGGACAAATTGTTGGTGGAGTACACCTTCTGATTTGTTCTCATCTAGCTCTATGGTCAAGCCGAAATTGGCTTTTGTATGCTCCCAATCTCATGTGGGATGCCCTCATGAGCGATTTCTATCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

36.47

Weight (kDa)

9.01

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 2 cut(s) 40, 132
AccI GTMKAC 1 cut(s) 668
AccII CGCG 3 cut(s) 34, 225, 594
AciI CCGC 7 cut(s) 40, 55, 119, 132, 169, 223, 292
AclWI GGATC 2 cut(s) 37, 97
AcoI YGGCCR 2 cut(s) 41, 339
AcsI RAATTY 2 cut(s) 400, 650
AcuI CTGAAG 4 cut(s) 80, 347, 768, 798
AfaI GTAC 3 cut(s) 587, 604, 858
AfiI CCNNNNNNNGG 5 cut(s) 50, 168, 369, 370, 453
AflIII ACRYGT 1 cut(s) 512
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 3 cut(s) 196, 227, 472
AluBI AGCT 2 cut(s) 392, 884
AluI AGCT 2 cut(s) 392, 884
Alw26I GTCTC 3 cut(s) 306, 471, 585
AlwI GGATC 2 cut(s) 37, 97
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 5 cut(s) 41, 194, 339, 417, 439
ApaI GGGCCC 1 cut(s) 421
ApeKI GCWGC 3 cut(s) 124, 219, 408
ApoI RAATTY 2 cut(s) 400, 650
AsiGI ACCGGT 1 cut(s) 102
AspLEI GCGC 3 cut(s) 124, 227, 537
AspS9I GGNCC 4 cut(s) 417, 418, 439, 469
AsuC2I CCSGG 1 cut(s) 343
AsuII TTCGAA 1 cut(s) 273
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 3 cut(s) 349, 364, 421
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 111, 231, 395
BccI CCATC 2 cut(s) 105, 109
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 3 cut(s) 198, 229, 474
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 306, 471, 585
BfaI CTAG 1 cut(s) 881
BfoI RGCGCY 1 cut(s) 125
BglII AGATCT 1 cut(s) 7
BisI GCNGC 7 cut(s) 41, 56, 120, 125, 220, 223, 409
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 7 cut(s) 42, 57, 121, 126, 221, 224, 410
Bme1390I CCNGG 4 cut(s) 198, 229, 343, 474
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 4 cut(s) 417, 418, 439, 469
BmiI GGNNCC 5 cut(s) 77, 361, 419, 470, 471
BmrFI CCNGG 4 cut(s) 198, 229, 343, 474
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 5 cut(s) 156, 279, 311, 522, 925
BmuI ACTGGG 1 cut(s) 415
BpmI CTGGAG 2 cut(s) 250, 263
Bpu1102I GCTNAGC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 708, 782
BpuMI CCSGG 1 cut(s) 343
BsaAI YACGTR 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 954
BsaI GGTCTC 2 cut(s) 306, 471
BsaJI CCNNGG 8 cut(s) 44, 197, 241, 316, 342, 452, 472, 619
BsaWI WCCGGW 2 cut(s) 78, 102
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 168, 369, 370, 453
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 3 cut(s) 192, 280, 421
Bse3DI GCAATG 2 cut(s) 558, 827
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 3 cut(s) 198, 229, 474
BseDI CCNNGG 8 cut(s) 44, 197, 241, 316, 342, 452, 472, 619
BseGI GGATG 4 cut(s) 120, 326, 652, 940
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 5 cut(s) 50, 168, 369, 370, 453
BseMI GCAATG 2 cut(s) 558, 827
BseMII CTCAG 2 cut(s) 119, 596
BseNI ACTGG 3 cut(s) 192, 280, 421
BseRI GAGGAG 1 cut(s) 779
BseSI GKGCMC 3 cut(s) 349, 364, 421
BseX3I CGGCCG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 111, 231, 395
BseYI CCCAGC 3 cut(s) 138, 642, 770
Bsh1236I CGCG 3 cut(s) 34, 225, 594
Bsh1285I CGRYCG 3 cut(s) 107, 173, 342
BshFI GGCC 5 cut(s) 43, 196, 341, 419, 441
BshNI GGYRCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 102
BsiEI CGRYCG 3 cut(s) 107, 173, 342
BsiSI CCGG 3 cut(s) 79, 103, 342
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 5 cut(s) 50, 168, 369, 370, 453
BsmAI GTCTC 3 cut(s) 306, 471, 585
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 5 cut(s) 43, 196, 341, 419, 441
Bso31I GGTCTC 2 cut(s) 306, 471
Bsp119I TTCGAA 1 cut(s) 273
Bsp120I GGGCCC 1 cut(s) 417
Bsp1286I GDGCHC 3 cut(s) 349, 364, 421
Bsp1720I GCTNAGC 1 cut(s) 128
Bsp68I TCGCGA 1 cut(s) 34
BspACI CCGC 7 cut(s) 40, 55, 119, 132, 169, 223, 292
BspANI GGCC 5 cut(s) 43, 196, 341, 419, 441
BspCNI CTCAG 2 cut(s) 120, 595
BspFNI CGCG 3 cut(s) 34, 225, 594
BspHI TCATGA 2 cut(s) 730, 942
BspLI GGNNCC 5 cut(s) 77, 361, 419, 470, 471
BspPI GGATC 2 cut(s) 37, 97
BspT104I TTCGAA 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 2 cut(s) 306, 471
BsrBI CCGCTC 2 cut(s) 40, 132
BsrDI GCAATG 2 cut(s) 558, 827
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 3 cut(s) 192, 280, 421
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 8 cut(s) 44, 197, 241, 316, 342, 452, 472, 619
BssT1I CCWWGG 3 cut(s) 241, 452, 619
Bst2UI CCWGG 3 cut(s) 198, 229, 474
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 513
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 626
BstDEI CTNAG 3 cut(s) 128, 582, 795
BstDSI CCRYGG 1 cut(s) 44
BstENI CCTNNNNNAGG 1 cut(s) 451
BstF5I GGATG 4 cut(s) 120, 326, 652, 940
BstFNI CGCG 3 cut(s) 34, 225, 594
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 124, 227, 537
BstMAI GTCTC 3 cut(s) 306, 471, 585
BstMCI CGRYCG 3 cut(s) 107, 173, 342
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 3 cut(s) 198, 229, 474
BstSCI CCNGG 4 cut(s) 196, 227, 341, 472
BstSLI GKGCMC 3 cut(s) 349, 364, 421
BstUI CGCG 3 cut(s) 34, 225, 594
BstV1I GCAGC 3 cut(s) 111, 231, 395
BstX2I RGATCY 2 cut(s) 7, 89
BstXI CCANNNNNNTGG 1 cut(s) 459
BstYI RGATCY 2 cut(s) 7, 89
BstZI CGGCCG 1 cut(s) 339
BsuRI GGCC 5 cut(s) 43, 196, 341, 419, 441
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 4 cut(s) 120, 326, 652, 940
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 1 cut(s) 635
BtuMI TCGCGA 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 626
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 2 cut(s) 730, 942
CfoI GCGC 3 cut(s) 124, 227, 537
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 4 cut(s) 417, 418, 439, 469
Csp6I GTAC 3 cut(s) 586, 603, 857
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 3 cut(s) 731, 928, 943
CviQI GTAC 3 cut(s) 586, 603, 857
DdeI CTNAG 3 cut(s) 128, 582, 795
EaeI YGGCCR 2 cut(s) 41, 339
EagI CGGCCG 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EclXI CGGCCG 1 cut(s) 339
Eco130I CCWWGG 3 cut(s) 241, 452, 619
Eco24I GRGCYC 1 cut(s) 421
Eco31I GGTCTC 2 cut(s) 306, 471
Eco47I GGWCC 1 cut(s) 469
Eco52I CGGCCG 1 cut(s) 339
Eco57I CTGAAG 4 cut(s) 80, 347, 768, 798
EcoNI CCTNNNNNAGG 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 196, 227, 472
EcoT14I CCWWGG 3 cut(s) 241, 452, 619
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 241, 452, 619
FaeI CATG 3 cut(s) 734, 931, 946
FaqI GGGAC 1 cut(s) 482
FatI CATG 3 cut(s) 730, 927, 942
FbaI TGATCA 1 cut(s) 555
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 7 cut(s) 41, 56, 120, 125, 220, 223, 409
FokI GGATG 4 cut(s) 127, 333, 659, 947
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 7 cut(s) 41, 56, 120, 125, 220, 223, 409
FspBI CTAG 1 cut(s) 881
GlaI GCGC 3 cut(s) 123, 226, 536
GluI GCNGC 7 cut(s) 41, 56, 120, 125, 220, 223, 409
GsaI CCCAGC 3 cut(s) 142, 646, 774
GsuI CTGGAG 2 cut(s) 250, 263
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 5 cut(s) 43, 196, 341, 419, 441
HapII CCGG 3 cut(s) 79, 103, 342
HhaI GCGC 3 cut(s) 124, 227, 537
Hin1II CATG 3 cut(s) 734, 931, 946
Hin6I GCGC 3 cut(s) 122, 225, 535
HinP1I GCGC 3 cut(s) 122, 225, 535
HinfI GANTC 2 cut(s) 234, 578
HpaII CCGG 3 cut(s) 79, 103, 342
Hpy166II GTNNAC 2 cut(s) 669, 859
Hpy188I TCNGA 5 cut(s) 96, 181, 385, 817, 867
Hpy188III TCNNGA 7 cut(s) 33, 108, 378, 460, 731, 761, 943
Hpy8I GTNNAC 2 cut(s) 669, 859
HpyAV CCTTC 5 cut(s) 55, 280, 349, 491, 872
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 3 cut(s) 307, 682, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 3 cut(s) 128, 582, 795
HpySE526I ACGT 1 cut(s) 512
Hsp92II CATG 3 cut(s) 734, 931, 946
HspAI GCGC 3 cut(s) 122, 225, 535
KflI GGGWCCC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 555
LmnI GCTCC 1 cut(s) 922
Lsp1109I GCAGC 3 cut(s) 111, 231, 395
LweI GCATC 5 cut(s) 156, 279, 311, 522, 925
MaeI CTAG 1 cut(s) 881
MaeII ACGT 1 cut(s) 512
MbiI CCGCTC 2 cut(s) 40, 132
MboII GAAGA 3 cut(s) 137, 587, 774
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 2 cut(s) 7, 89
MhlI GDGCHC 3 cut(s) 349, 364, 421
MluCI AATT 9 cut(s) 400, 551, 609, 650, 673, 690, 754, 843, 901
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 159, 183
MnlI CCTC 7 cut(s) 44, 199, 311, 457, 757, 760, 950
MslI CAYNNNNRTG 1 cut(s) 735
MspI CCGG 3 cut(s) 79, 103, 342
MspR9I CCNGG 4 cut(s) 198, 229, 343, 474
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 3 cut(s) 198, 229, 474
MvnI CGCG 3 cut(s) 34, 225, 594
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 343
NlaIII CATG 3 cut(s) 734, 931, 946
NlaIV GGNNCC 5 cut(s) 77, 361, 419, 470, 471
NruI TCGCGA 1 cut(s) 34
NspV TTCGAA 1 cut(s) 273
PagI TCATGA 2 cut(s) 730, 942
PfeI GAWTC 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 7 cut(s) 42, 57, 121, 126, 221, 224, 410
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
Ppu21I YACGTR 1 cut(s) 513
PpuMI RGGWCCY 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 3 cut(s) 196, 227, 472
PspFI CCCAGC 3 cut(s) 138, 642, 770
PspGI CCWGG 3 cut(s) 196, 227, 472
PspN4I GGNNCC 5 cut(s) 77, 361, 419, 470, 471
PspOMI GGGCCC 1 cut(s) 417
PspPI GGNCC 4 cut(s) 417, 418, 439, 469
PspPPI RGGWCCY 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 7, 89
RruI TCGCGA 1 cut(s) 34
RsaI GTAC 3 cut(s) 587, 604, 858
RsaNI GTAC 3 cut(s) 586, 603, 857
RseI CAYNNNNRTG 1 cut(s) 735
SatI GCNGC 7 cut(s) 41, 56, 120, 125, 220, 223, 409
Sau96I GGNCC 4 cut(s) 417, 418, 439, 469
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 4 cut(s) 198, 229, 343, 474
SduI GDGCHC 3 cut(s) 349, 364, 421
SetI ASST 7 cut(s) 394, 449, 483, 515, 730, 864, 886
SfaNI GCATC 5 cut(s) 156, 279, 311, 522, 925
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 2 cut(s) 723, 761
SmoI CTYRAG 2 cut(s) 723, 761
Sse9I AATT 9 cut(s) 400, 551, 609, 650, 673, 690, 754, 843, 901
SsiI CCGC 7 cut(s) 40, 55, 119, 132, 169, 223, 292
SspI AATATT 1 cut(s) 520
SspMI CTAG 1 cut(s) 881
StyD4I CCNGG 4 cut(s) 196, 227, 341, 472
StyI CCWWGG 3 cut(s) 241, 452, 619
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 515
TaqI TCGA 6 cut(s) 107, 173, 252, 273, 388, 484
TaqII GACCGA 1 cut(s) 330
TasI AATT 9 cut(s) 400, 551, 609, 650, 673, 690, 754, 843, 901
TatI WGTACW 2 cut(s) 585, 856
TauI GCSGC 4 cut(s) 43, 58, 122, 225
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 1 cut(s) 635
TseI GCWGC 3 cut(s) 124, 219, 408
TspDTI ATGAA 4 cut(s) 368, 413, 588, 663
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 1 cut(s) 635
VpaK11BI GGWCC 1 cut(s) 469
XagI CCTNNNNNAGG 1 cut(s) 451
XapI RAATTY 2 cut(s) 400, 650
XmiI GTMKAC 1 cut(s) 668
XspI CTAG 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.