Rroxscaffold_2G00115230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016970
Physical Location & Seq
Forward (+)
41439711 .. 41443481
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115230.1

Sequence Viewer

Length: 405 bp
ATGAATGAAGTAAGCAAGCAAATGATAGAGCTTAACTTTACCTTGATTAGCCCCTACGATGATCCAAATATACAACCAAGACTAAAAAATCCCAGCCTAAATAGAAGGCCCAATAGGGCAGCCCCAAAGAGAAGAGGCCTAAACCATGGCCCAAGCAAGCTAGGGTTGACCAAACCCAAACCACCCTTCCACCACGCCGCAGTAGGCTATGCAACGCCGCCCTCTAGCCTCGCCCACGAAACCGCCCACCCCACGAGCCGCCTCGCCCCGAGTTCCCCCGCCCTCACCCCAAACCGTGCCATCGAGCTTCGCCACAAACCAAGATCGCCTCAAGCCGCGATCGCTCAAGCCCCGAGCTTCGCTCCGCAAAGCCCAGCCCCGAGCCCCACCGCCACACGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.56

Weight (kDa)

11.57

Isoelectric Point (pI)

91.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 338
AciI CCGC 9 cut(s) 198, 218, 243, 259, 279, 336, 365, 390, 400
AclWI GGATC 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 4 cut(s) 31, 160, 307, 357
AluI AGCT 4 cut(s) 31, 160, 307, 357
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 3 cut(s) 268, 352, 379
AoxI GGCC 3 cut(s) 107, 136, 148
ApeKI GCWGC 1 cut(s) 119
AsiSI GCGATCGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 108, 149
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 3 cut(s) 268, 352, 379
BanII GRGCYC 1 cut(s) 386
BauI CACGAG 1 cut(s) 253
BbvI GCAGC 1 cut(s) 131
BccI CCATC 1 cut(s) 308
BfaI CTAG 3 cut(s) 161, 225, 403
BisI GCNGC 6 cut(s) 120, 198, 218, 259, 336, 400
BlsI GCNGC 6 cut(s) 121, 199, 219, 260, 337, 401
BmeT110I CYCGRG 3 cut(s) 268, 352, 379
BmgT120I GGNCC 2 cut(s) 108, 149
BplI GAGNNNNNCTC 2 cut(s) 346, 378
BpuEI CTTGAG 2 cut(s) 315, 330
BsaJI CCNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 131
BseYI CCCAGC 2 cut(s) 92, 373
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 3 cut(s) 109, 138, 150
BsiEI CGRYCG 1 cut(s) 342
BsiHKCI CYCGRG 3 cut(s) 268, 352, 379
BsnI GGCC 3 cut(s) 109, 138, 150
BsoBI CYCGRG 3 cut(s) 268, 352, 379
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 61, 323, 339
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 9 cut(s) 198, 218, 243, 259, 279, 336, 365, 390, 400
BspANI GGCC 3 cut(s) 109, 138, 150
BspFNI CGCG 1 cut(s) 338
BspPI GGATC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 61, 323, 339
BssSI CACGAG 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 17, 158
BstDSI CCRYGG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 338
BstKTI GATC 3 cut(s) 64, 326, 342
BstMBI GATC 3 cut(s) 61, 323, 339
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 131
BsuRI GGCC 3 cut(s) 109, 138, 150
BtgI CCRYGG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 17, 158
Cfr13I GGNCC 2 cut(s) 108, 149
CviAII CATG 1 cut(s) 146
DpnI GATC 3 cut(s) 63, 325, 341
DpnII GATC 3 cut(s) 61, 323, 339
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 386
Eco88I CYCGRG 3 cut(s) 268, 352, 379
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 71, 147, 210
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 6 cut(s) 120, 198, 218, 259, 336, 400
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 6 cut(s) 120, 198, 218, 259, 336, 400
FspBI CTAG 3 cut(s) 161, 225, 403
GluI GCNGC 6 cut(s) 120, 198, 218, 259, 336, 400
GsaI CCCAGC 2 cut(s) 96, 377
HaeIII GGCC 3 cut(s) 109, 138, 150
Hin1II CATG 1 cut(s) 149
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 168
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 99, 196
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 3 cut(s) 61, 323, 339
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 2 cut(s) 106, 387
Lsp1109I GCAGC 1 cut(s) 131
MaeI CTAG 3 cut(s) 161, 225, 403
MalI GATC 3 cut(s) 63, 325, 341
MboI GATC 3 cut(s) 61, 323, 339
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 386
MnlI CCTC 6 cut(s) 128, 232, 239, 272, 293, 339
MseI TTAA 1 cut(s) 33
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 341
NcoI CCATGG 1 cut(s) 145
NdeII GATC 3 cut(s) 61, 323, 339
NlaIII CATG 1 cut(s) 149
PceI AGGCCT 1 cut(s) 138
PkrI GCNGC 6 cut(s) 121, 199, 219, 260, 337, 401
Ple19I CGATCG 1 cut(s) 342
PspFI CCCAGC 2 cut(s) 92, 373
PspPI GGNCC 2 cut(s) 108, 149
PvuI CGATCG 1 cut(s) 342
RgaI GCGATCGC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 6 cut(s) 120, 198, 218, 259, 336, 400
Sau3AI GATC 3 cut(s) 61, 323, 339
Sau96I GGNCC 2 cut(s) 108, 149
SduI GDGCHC 1 cut(s) 386
SetI ASST 5 cut(s) 33, 44, 162, 309, 359
SfaAI GCGATCGC 1 cut(s) 342
SgfI GCGATCGC 1 cut(s) 342
SmlI CTYRAG 2 cut(s) 330, 345
SmoI CTYRAG 2 cut(s) 330, 345
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 9 cut(s) 198, 218, 243, 259, 279, 336, 365, 390, 400
SspMI CTAG 3 cut(s) 161, 225, 403
StuI AGGCCT 1 cut(s) 138
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 303
TauI GCSGC 5 cut(s) 200, 220, 261, 338, 402
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 17, 21
XspI CTAG 3 cut(s) 161, 225, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.