RchiOBHm_Chr1g0344681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010615
Physical Location & Seq
Forward (+)
37024708 .. 37025986
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57109

Sequence Viewer

Length: 408 bp
ATGAAAGTTTCTCCTTTTTCCTATTATGTCCTCATCCTTTCTATAGGGTTTCGTCTCTTCCCAGATCTCTCTTCCCAGTGTCCTCCTCAAAACCATCGATCGATCCAGATCTTTCTTCCCAGCCTGGCAGCCTCCTCCTCAAAACCATCGATTGATTTCGTTAAGAGCATCTCTCTTCCCAGCCTCTTCCTCAAAACCATCGATCTCTCAAGAGGATTCAAAACCCAATTCGGTCGTTCCTCCGCCACACGCCTCAAACCCAAAGCAAACCATCGATCGATCTCTCAAGAGGATTCAAAACCCAACTCCGTCGCTCCTCCGCCACACGCCCCAAACCCAAAGCATTCCCGGATCGATCTCTCTGTCTCTTCAAAACCCAACTCCTCATGGATGTTTTTTGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

10.45

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 243, 320
AclWI GGATC 2 cut(s) 97, 359
AgsI TTSAA 3 cut(s) 220, 297, 372
AjnI CCWGG 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 59, 370
AlwI GGATC 2 cut(s) 97, 359
ApeKI GCWGC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 349
BbvI GCAGC 1 cut(s) 140
BccI CCATC 4 cut(s) 102, 154, 206, 279
BciT130I CCWGG 1 cut(s) 125
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 59, 370
BfmI CTRYAG 1 cut(s) 42
BglII AGATCT 2 cut(s) 64, 108
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 125, 349
BmrFI CCNGG 2 cut(s) 125, 349
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 157, 189
BpuEI CTTGAG 2 cut(s) 193, 270
BpuMI CCSGG 1 cut(s) 349
Bsa29I ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
BsaBI GATNNNNATC 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 1 cut(s) 125
BseCI ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
BseGI GGATG 2 cut(s) 33, 396
BseJI GATNNNNATC 1 cut(s) 107
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 5 cut(s) 75, 124, 127, 306, 373
BseXI GCAGC 1 cut(s) 140
BseYI CCCAGC 2 cut(s) 119, 179
Bsh1285I CGRYCG 3 cut(s) 101, 235, 278
BshVI ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
BsiEI CGRYCG 3 cut(s) 101, 235, 278
BsiSI CCGG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 59, 370
BsmBI CGTCTC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 343
Bsp143I GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
BspACI CCGC 2 cut(s) 243, 320
BspDI ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
BspPI GGATC 2 cut(s) 97, 359
BsrI ACTGG 1 cut(s) 76
BssMI GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 5 cut(s) 62, 76, 180, 191, 373
BstF5I GGATG 2 cut(s) 33, 396
BstKTI GATC 9 cut(s) 67, 101, 105, 111, 205, 278, 282, 354, 358
BstMAI GTCTC 2 cut(s) 59, 370
BstMBI GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
BstMCI CGRYCG 3 cut(s) 101, 235, 278
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 123, 347
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 64, 108
BstYI RGATCY 2 cut(s) 64, 108
Bsu15I ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
BsuTUI ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
BtsCI GGATG 2 cut(s) 33, 396
BtsIMutI CAGTG 1 cut(s) 83
ClaI ATCGAT 7 cut(s) 97, 101, 149, 201, 274, 278, 354
CviAII CATG 2 cut(s) 387, 405
CviJI RGCY 3 cut(s) 123, 131, 183
CviKI_1 RGCY 3 cut(s) 123, 131, 183
DpnI GATC 9 cut(s) 66, 100, 104, 110, 204, 277, 281, 353, 357
DpnII GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
Eam1104I CTCTTC 5 cut(s) 62, 76, 180, 191, 373
EarI CTCTTC 5 cut(s) 62, 76, 180, 191, 373
EciI GGCGGA 2 cut(s) 232, 309
EcoRII CCWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 390, 408
FaiI YATR 4 cut(s) 27, 44, 388, 406
FatI CATG 2 cut(s) 386, 404
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 2 cut(s) 20, 403
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 2 cut(s) 123, 183
HapII CCGG 1 cut(s) 349
Hin1II CATG 2 cut(s) 390, 408
HinfI GANTC 2 cut(s) 216, 293
HpaII CCGG 1 cut(s) 349
Hpy188III TCNNGA 3 cut(s) 106, 210, 287
Hpy99I CGWCG 1 cut(s) 314
Hsp92II CATG 2 cut(s) 390, 408
Kzo9I GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 8 cut(s) 75, 89, 110, 119, 133, 137, 193, 362
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 177
MalI GATC 9 cut(s) 66, 100, 104, 110, 204, 277, 281, 353, 357
MboI GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
MboII GAAGA 6 cut(s) 49, 63, 107, 167, 178, 360
MflI RGATCY 2 cut(s) 64, 108
MluCI AATT 1 cut(s) 227
MseI TTAA 1 cut(s) 162
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 2 cut(s) 125, 349
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 1 cut(s) 125
NciI CCSGG 1 cut(s) 349
NdeII GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
NlaIII CATG 2 cut(s) 390, 408
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 216, 293
PfoI TCCNGGA 1 cut(s) 347
PkrI GCNGC 1 cut(s) 130
Ple19I CGATCG 2 cut(s) 101, 278
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 2 cut(s) 119, 179
PspGI CCWGG 1 cut(s) 123
PsuI RGATCY 2 cut(s) 64, 108
PvuI CGATCG 2 cut(s) 101, 278
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 9 cut(s) 64, 98, 102, 108, 202, 275, 279, 351, 355
ScrFI CCNGG 2 cut(s) 125, 349
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 42
SmlI CTYRAG 2 cut(s) 208, 285
SmoI CTYRAG 2 cut(s) 208, 285
Sse9I AATT 1 cut(s) 227
SsiI CCGC 2 cut(s) 243, 320
StyD4I CCNGG 2 cut(s) 123, 347
TaqI TCGA 7 cut(s) 97, 101, 149, 201, 274, 278, 354
TaqII GACCGA 1 cut(s) 221
TasI AATT 1 cut(s) 227
TfiI GAWTC 2 cut(s) 216, 293
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 83
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.