Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Forward (+)

60106255 .. 60106930

Gene Structure 676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGCATCTCTCCCTTTCTCAAGTCCTCATGGCATCGTCGACGTCCCCAGCCTCTTGGCCGCCCTCTAGTTTTCAACTACCACAGAGAAGATGGAACTAAAGTACCTTGCAGAACCAACTTCCCAAAACCACGAAACCAAGCTCTACCATTATCACCACAACCGACGAGAAATGGTTTCGCAGTCGAGCAGCGAAGACAAGTAGCTGCCCCATCGAACGGTGATGGTTCTCGGTCCAAGAGAACTGCTCCTTCGATCACGGGCTCGGGTGGTTTGTTTCGTGCCGCCGTTGACGCGGCCGAACCGCACGTGCACTCGGTGACATCACATGAACTTTCCGGACTCGACATGGAGTTGTTGATTGAAGAGCTGCCGCATACATTTGAGTCCATGGAGGAGCTGGCCATCCTTTTGGAAGTTACTATCATACCCCTCCTCGCCACACTTTTGTACAAGGACTTCACCGCAGAACGTGATTATATATTACAAGGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

7.97

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	6 cut(s)	61, 285, 296, 305, 374, 465
AcoI	YGGCCR	3 cut(s)	58, 297, 402
AcvI	CACGTG	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	105, 452
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	76, 365
AluBI	AGCT	4 cut(s)	143, 206, 370, 400
AluI	AGCT	4 cut(s)	143, 206, 370, 400
Alw21I	GWGCWC	1 cut(s)	315
Alw44I	GTGCAC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	265
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	3 cut(s)	58, 297, 402
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	190, 206, 370
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	4 cut(s)	147, 233, 331, 454
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	315
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BalI	TGGCCA	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
BbrPI	CACGTG	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	193, 202, 357
BccI	CCATC	4 cut(s)	86, 218, 220, 413
BceAI	ACGGC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	7 cut(s)	61, 191, 207, 285, 297, 371, 374
BlsI	GCNGC	7 cut(s)	62, 192, 208, 286, 298, 372, 375
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	234
BmsI	GCATC	2 cut(s)	15, 43
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	3 cut(s)	27, 232, 264
BpuEI	CTTGAG	1 cut(s)	5
BsaAI	YACGTR	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	410, 425
BseSI	GKGCMC	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	193, 202, 357
BseYI	CCCAGC	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	60, 299, 404
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	60, 299, 404
BsoBI	CYCGRG	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	266, 315
Bsp13I	TCCGGA	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	6 cut(s)	61, 285, 296, 305, 374, 465
BspANI	GGCC	3 cut(s)	60, 299, 404
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	255
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	193, 202, 357
BstV2I	GAAGAC	1 cut(s)	202
BstXI	CCANNNNNNTGG	2 cut(s)	56, 412
BstZI	CGGCCG	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	60, 299, 404
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	104, 451
CviAII	CATG	4 cut(s)	30, 329, 349, 391
CviJI	RGCY	9 cut(s)	52, 60, 143, 206, 264, 299, 370, 400, 404
CviKI_1	RGCY	9 cut(s)	52, 60, 143, 206, 264, 299, 370, 400, 404
CviQI	GTAC	2 cut(s)	104, 451
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
DraIII	CACNNNGTG	1 cut(s)	319
EaeI	YGGCCR	3 cut(s)	58, 297, 402
EagI	CGGCCG	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	4 cut(s)	33, 332, 352, 394
FaiI	YATR	8 cut(s)	31, 330, 350, 378, 392, 428, 480, 482
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	4 cut(s)	29, 328, 348, 390
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	7 cut(s)	61, 191, 207, 285, 297, 371, 374
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	7 cut(s)	61, 191, 207, 285, 297, 371, 374
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	7 cut(s)	61, 191, 207, 285, 297, 371, 374
GsaI	CCCAGC	1 cut(s)	52
HaeIII	GGCC	3 cut(s)	60, 299, 404
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	4 cut(s)	33, 332, 352, 394
HincII	GTYRAC	2 cut(s)	41, 292
HindII	GTYRAC	2 cut(s)	41, 292
HinfI	GANTC	2 cut(s)	342, 386
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	4 cut(s)	147, 233, 331, 454
Hpy166II	GTNNAC	3 cut(s)	41, 292, 313
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	3 cut(s)	41, 292, 313
Hpy99I	CGWCG	3 cut(s)	42, 45, 169
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	3 cut(s)	43, 309, 472
HpyCH4V	TGCA	2 cut(s)	111, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpySE526I	ACGT	3 cut(s)	43, 309, 472
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	4 cut(s)	33, 332, 352, 394
Kpn2I	TCCGGA	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	255
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	253, 397
LpnPI	CCDG	3 cut(s)	62, 352, 386
Lsp1109I	GCAGC	3 cut(s)	193, 202, 357
LweI	GCATC	2 cut(s)	15, 43
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	3 cut(s)	43, 309, 472
MaeIII	GTNAC	2 cut(s)	319, 418
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	3 cut(s)	101, 207, 377
MhlI	GDGCHC	2 cut(s)	266, 315
MlsI	TGGCCA	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	2 cut(s)	336, 395
MnlI	CCTC	6 cut(s)	37, 63, 75, 388, 443, 446
Mox20I	TGGCCA	1 cut(s)	404
MroI	TCCGGA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	4 cut(s)	33, 332, 352, 394
NmuCI	GTSAC	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	360
PkrI	GCNGC	7 cut(s)	62, 192, 208, 286, 298, 372, 375
PleI	GAGTC	2 cut(s)	336, 394
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
PpsI	GAGTC	2 cut(s)	336, 394
Ppu21I	YACGTR	1 cut(s)	310
PspCI	CACGTG	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	234
RsaI	GTAC	2 cut(s)	105, 452
RsaNI	GTAC	2 cut(s)	104, 451
SalI	GTCGAC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	7 cut(s)	61, 191, 207, 285, 297, 371, 374
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	2 cut(s)	336, 395
SduI	GDGCHC	2 cut(s)	266, 315
SetI	ASST	9 cut(s)	46, 109, 145, 208, 312, 372, 402, 475, 493
SfaNI	GCATC	2 cut(s)	15, 43
SgrDI	CGTCGACG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SsiI	CCGC	6 cut(s)	61, 285, 296, 305, 374, 465
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	3 cut(s)	46, 312, 475
TaqI	TCGA	5 cut(s)	40, 186, 215, 254, 345
TaqII	GACCGA	1 cut(s)	222
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	4 cut(s)	63, 287, 299, 376
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	190, 206, 370
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	345
VneI	GTGCAC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	89, 397
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	1 cut(s)	68
ZraI	GACGTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.