Rroxscaffold_5G00357000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010615
Physical Location & Seq
Forward (+)
36507876 .. 36512916
5041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357000.1

Sequence Viewer

Length: 378 bp
ATGGAGTTGTTGATTGAAGAGCTGCCGCATACATTTGAGTCCATGGAGGAGCTGGCCATCCTTTTGGAAGTTACTATCATACCCCTCCTGCCACACTTTTGTACAAGGACTTCACTGCAGAACGTGATTATATATTACAAGGTTGGTAAGGCTGCTTGGCTTGGACTGAGCAAGCCCGATAGGGTGCTAGATCAGTTATCAAGACCAAGTAATCACCAACTCGAATTCCATCAAGAACTTGTTCCGGACGGCATCGCTGATTGTGTTTTGCGTTGTGCGGGGATGGCAGGCTTCGGCGGGGACTATGCAAATCTGGGTGGCGGTCGGGTTCGATGGGGAGTGGCGGCGTGGTTCGAGGAGCTATGCGGTGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

4.85

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 6 cut(s) 26, 278, 297, 321, 344, 366
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 3 cut(s) 22, 52, 361
AluI AGCT 3 cut(s) 22, 52, 361
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 22, 152
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 206
BalI TGGCCA 1 cut(s) 56
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BbvI GCAGC 2 cut(s) 9, 139
BccI CCATC 4 cut(s) 65, 237, 277, 327
BceAI ACGGC 1 cut(s) 265
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 116
BisI GCNGC 4 cut(s) 23, 26, 153, 345
BlsI GCNGC 4 cut(s) 24, 27, 154, 346
BmsI GCATC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 244
BseAI TCCGGA 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 57, 288
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 2 cut(s) 62, 371
BseXI GCAGC 2 cut(s) 9, 139
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 101
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 6 cut(s) 26, 278, 297, 321, 344, 366
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 120
BspQI GCTCTTC 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 101
BstC8I GCNNGC 3 cut(s) 54, 173, 289
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 57, 288
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 9, 139
BstXI CCANNNNNNTGG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 57, 288
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 54, 173, 289
Csp6I GTAC 1 cut(s) 102
CviAII CATG 1 cut(s) 43
CviJI RGCY 8 cut(s) 22, 52, 56, 152, 160, 175, 291, 361
CviKI_1 RGCY 8 cut(s) 22, 52, 56, 152, 160, 175, 291, 361
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 46
FaiI YATR 7 cut(s) 30, 44, 80, 131, 133, 306, 364
FaqI GGGAC 1 cut(s) 314
FatI CATG 1 cut(s) 42
FauI CCCGC 2 cut(s) 271, 290
Fnu4HI GCNGC 4 cut(s) 23, 26, 153, 345
FokI GGATG 2 cut(s) 44, 295
Fsp4HI GCNGC 4 cut(s) 23, 26, 153, 345
FspBI CTAG 1 cut(s) 188
GluI GCNGC 4 cut(s) 23, 26, 153, 345
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 245
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 201, 233, 245
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 118, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 46
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 190
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 49, 358
LpnPI CCDG 5 cut(s) 38, 101, 258, 273, 299
Lsp1109I GCAGC 2 cut(s) 9, 139
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 70, 371
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 29
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 224
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 40, 95, 349
Mox20I TGGCCA 1 cut(s) 56
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 284
NcoI CCATGG 1 cut(s) 42
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 4 cut(s) 24, 27, 154, 346
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 120
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 12
SatI GCNGC 4 cut(s) 23, 26, 153, 345
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 47
SetI ASST 5 cut(s) 24, 54, 126, 144, 363
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 224
SsiI CCGC 6 cut(s) 26, 278, 297, 321, 344, 366
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 222, 331, 354
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 101
TauI GCSGC 2 cut(s) 28, 347
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 22, 152
Tsp45I GTSAC 1 cut(s) 371
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.