Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Forward (+)

60099569 .. 60099952

Gene Structure 384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGGGATTCGCCCAAAACGCCGAGACAACGCAGCGAGTGGCCGAGACGGTGACGAACCGGTTCAAGCCGGAGGACATTCCGGTGTATAGGGAGCTGATGAAAGAGTTGCCGTGTGACAGTGGTTTGTTTCTCGTGCCGCCGTTGACGCGGCCGAACCGCAAGTACGTGCACTCGGTGACATCACATGAACTTTCCGACGACATGGAGTTGTTGATTGAAGAGCTGCCGCATACATTTGAGTCCATGGAGGAGCTGGCCATCCTTTTGGAAGTTACTATCATACCCCTCCCGCCACACTTTTGTACAAGGACTTCACCCGCGAACGTGATTATATATTACAAGGTTGGTAAAGGTCGCTTGCTTGGAGTGAGTTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009405 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030054 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034480 GO:0035821 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0050896 GO:0051701 GO:0051704 GO:0051716 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0052642 GO:0055044 GO:0071496 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

127

Amino Acids

14.41

Weight (kDa)

5.17

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	151, 323
AciI	CCGC	6 cut(s)	140, 151, 160, 230, 293, 321
AcoI	YGGCCR	3 cut(s)	42, 152, 258
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	2 cut(s)	167, 307
AgeI	ACCGGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	67, 221
AluBI	AGCT	3 cut(s)	97, 226, 256
AluI	AGCT	3 cut(s)	97, 226, 256
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	20, 41
Alw44I	GTGCAC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	42, 152, 258
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	34, 226
AsiGI	ACCGGT	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	64, 190, 309
BaeGI	GKGCMC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	260
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BauI	CACGAG	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	46, 213
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	2 cut(s)	97, 127
BcoDI	GTCTC	2 cut(s)	20, 41
BisI	GCNGC	5 cut(s)	35, 140, 152, 227, 230
BlsI	GCNGC	5 cut(s)	36, 141, 153, 228, 231
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	2 cut(s)	60, 82
Bse118I	RCCGGY	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	174
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	46, 213
Bsh1236I	CGCG	2 cut(s)	151, 323
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	44, 154, 260
BshTI	ACCGGT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	61, 71, 83
BsmAI	GTCTC	2 cut(s)	20, 41
BsmBI	CGTCTC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	44, 154, 260
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	305
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	6 cut(s)	140, 151, 160, 230, 293, 321
BspANI	GGCC	3 cut(s)	44, 154, 260
BspFNI	CGCG	2 cut(s)	151, 323
BspQI	GCTCTTC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	52, 122
Bst6I	CTCTTC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	258, 362
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	2 cut(s)	151, 323
BstMAI	GTCTC	2 cut(s)	20, 41
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 148
BstSLI	GKGCMC	1 cut(s)	174
BstUI	CGCG	2 cut(s)	151, 323
BstV1I	GCAGC	2 cut(s)	46, 213
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	44, 154, 260
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	258, 362
Cfr10I	RCCGGY	1 cut(s)	60
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	166, 306
CspAI	ACCGGT	1 cut(s)	60
CviAII	CATG	3 cut(s)	188, 205, 247
CviJI	RGCY	7 cut(s)	44, 70, 97, 154, 226, 256, 260
CviKI_1	RGCY	7 cut(s)	44, 70, 97, 154, 226, 256, 260
CviQI	GTAC	2 cut(s)	166, 306
DraIII	CACNNNGTG	1 cut(s)	178
EaeI	YGGCCR	3 cut(s)	42, 152, 258
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EclXI	CGGCCG	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	3 cut(s)	191, 208, 250
FaiI	YATR	8 cut(s)	90, 189, 206, 234, 248, 284, 335, 337
FatI	CATG	3 cut(s)	187, 204, 246
FauI	CCCGC	2 cut(s)	300, 328
Fnu4HI	GCNGC	5 cut(s)	35, 140, 152, 227, 230
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	5 cut(s)	35, 140, 152, 227, 230
GluI	GCNGC	5 cut(s)	35, 140, 152, 227, 230
HaeIII	GGCC	3 cut(s)	44, 154, 260
HapII	CCGG	3 cut(s)	61, 71, 83
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	191, 208, 250
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	9, 242
HpaII	CCGG	3 cut(s)	61, 71, 83
HphI	GGTGA	3 cut(s)	64, 190, 309
Hpy166II	GTNNAC	2 cut(s)	147, 172
Hpy188I	TCNGA	1 cut(s)	199
Hpy8I	GTNNAC	2 cut(s)	147, 172
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	52, 122
HpyCH4IV	ACGT	2 cut(s)	168, 327
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 148
HpySE526I	ACGT	2 cut(s)	168, 327
Hsp92II	CATG	3 cut(s)	191, 208, 250
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	94, 253
LpnPI	CCDG	4 cut(s)	74, 84, 96, 242
Lsp1109I	GCAGC	2 cut(s)	46, 213
MaeII	ACGT	2 cut(s)	168, 327
MaeIII	GTNAC	4 cut(s)	52, 116, 178, 274
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	260
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	67, 244, 299
Mox20I	TGGCCA	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	3 cut(s)	61, 71, 83
MvnI	CGCG	2 cut(s)	151, 323
MwoI	GCNNNNNNNGC	2 cut(s)	20, 148
NcoI	CCATGG	1 cut(s)	246
NlaIII	CATG	3 cut(s)	191, 208, 250
NmeAIII	GCCGAG	2 cut(s)	49, 70
NmuCI	GTSAC	3 cut(s)	52, 116, 178
PciSI	GCTCTTC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	36, 141, 153, 228, 231
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	149, 181
RsaI	GTAC	2 cut(s)	167, 307
RsaNI	GTAC	2 cut(s)	166, 306
RseI	CAYNNNNRTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	216
SatI	GCNGC	5 cut(s)	35, 140, 152, 227, 230
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	99, 171, 228, 258, 330, 348, 358
SmiMI	CAYNNNNRTG	1 cut(s)	83
SsiI	CCGC	6 cut(s)	140, 151, 160, 230, 293, 321
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	52, 122
TaiI	ACGT	2 cut(s)	171, 330
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	3 cut(s)	142, 154, 232
TfiI	GAWTC	1 cut(s)	9
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	3 cut(s)	52, 116, 178
TseI	GCWGC	2 cut(s)	34, 226
Tsp45I	GTSAC	3 cut(s)	52, 116, 178
TspDTI	ATGAA	2 cut(s)	116, 204
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.