Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Reverse (-)

31007947 .. 31011830

Gene Structure 3884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAACGGGTTCAAGCCGGAGAACATTCCAGTGTATAGGGAGCTGGTGAAAGAGTTTGCAGTGTGTGACAGGTGGTTTGCTTCGGTGCCGGAGTCGACGCAGCCGAACCGGCAGTACGTGCACTCGGCGACGTCGCATGGACTTTCTGGGACTGATACGAAGTTGCTGATTGAAGGGCTGCCGCAGAAGACTATATTTGAGTCCATGGAGGAGGCTGCCATTCTTTCGGAATTTACTATCAGACCCCTCCTGCCACACTTTTGTACAGATAGGGTTGCTGAGCATAACCATTCTCTCTTCCCAACCTCTTCTGCCGTCAAAACACATCTTCCCATCGAGAGATCTCTCTGTGTCTTCAAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009405 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030054 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034480 GO:0035821 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0050896 GO:0051701 GO:0051704 GO:0051716 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0052642 GO:0055044 GO:0071496 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

121

Amino Acids

13.7

Weight (kDa)

6.28

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	1 - 73	1.8e-18	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	116, 265
AgsI	TTSAA	3 cut(s)	13, 173, 358
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	100, 178, 215
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	85
BbsI	GAAGAC	2 cut(s)	194, 346
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	112, 165, 202
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	4 cut(s)	101, 179, 182, 216
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	102, 180, 183, 217
BmiI	GGNNCC	1 cut(s)	87
BpiI	GAAGAC	2 cut(s)	194, 346
Bpu1102I	GCTNAGC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	112, 165, 202
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	17, 89, 109
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	341
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	341
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	302, 313
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	344
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 118
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	112, 165, 202
BstV2I	GAAGAC	2 cut(s)	194, 346
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	36, 66
Cfr10I	RCCGGY	1 cut(s)	108
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	115, 264
CviAII	CATG	2 cut(s)	137, 205
CviJI	RGCY	5 cut(s)	16, 43, 103, 178, 215
CviKI_1	RGCY	5 cut(s)	16, 43, 103, 178, 215
CviQI	GTAC	2 cut(s)	115, 264
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	302, 313
EarI	CTCTTC	2 cut(s)	302, 313
Eco130I	CCWWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	140, 208
FaiI	YATR	5 cut(s)	36, 138, 194, 206, 285
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	136, 204
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	4 cut(s)	101, 179, 182, 216
Fsp4HI	GCNGC	4 cut(s)	101, 179, 182, 216
GluI	GCNGC	4 cut(s)	101, 179, 182, 216
HapII	CCGG	3 cut(s)	17, 89, 109
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	140, 208
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	92, 200
HpaII	CCGG	3 cut(s)	17, 89, 109
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	96, 121
Hpy188I	TCNGA	2 cut(s)	229, 242
Hpy188III	TCNNGA	2 cut(s)	337, 358
Hpy8I	GTNNAC	2 cut(s)	96, 121
Hpy99I	CGWCG	3 cut(s)	100, 133, 136
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	117, 131
HpyCH4V	TGCA	2 cut(s)	59, 121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 118
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	2 cut(s)	117, 131
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	140, 208
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	8 cut(s)	29, 30, 42, 55, 102, 122, 132, 263
Lsp1109I	GCAGC	3 cut(s)	112, 165, 202
MaeII	ACGT	2 cut(s)	117, 131
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	5 cut(s)	199, 289, 300, 320, 346
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	101, 209
MnlI	CCTC	4 cut(s)	202, 205, 257, 316
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	3 cut(s)	17, 89, 109
MwoI	GCNNNNNNNGC	2 cut(s)	109, 118
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	2 cut(s)	140, 208
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	104
NmuCI	GTSAC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	102, 180, 183, 217
PleI	GAGTC	2 cut(s)	100, 208
PpsI	GAGTC	2 cut(s)	100, 208
Ppu21I	YACGTR	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	87
PsrI	GAACNNNNNNTAC	2 cut(s)	98, 130
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	2 cut(s)	116, 265
RsaNI	GTAC	2 cut(s)	115, 264
RseI	CAYNNNNRTG	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	94
SatI	GCNGC	4 cut(s)	101, 179, 182, 216
Sau3AI	GATC	1 cut(s)	341
SchI	GAGTC	2 cut(s)	101, 209
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	6 cut(s)	45, 74, 120, 134, 308, 365
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	2 cut(s)	120, 134
TaqI	TCGA	2 cut(s)	95, 336
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	1 cut(s)	184
TscAI	CASTG	2 cut(s)	36, 66
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	100, 178, 215
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	36, 66
VneI	GTGCAC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	8
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.