Rh5CG152100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010615
Physical Location & Seq
Reverse (-)
14122808 .. 14125429
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG152100.1

Sequence Viewer

Length: 405 bp
ATGGAAACACGGAGTGAACATGATTCATTTAATGAAATTTTACTCTTTTTTCCAATTATGTCCTCATCTTTTAACCTTGACCCAGATAGGGTTTTATTATTCTCAGCTTCTCTCTTCCAGTCTTCCCAGCCTCCTCTACCGTCAAAACTCAAAACACCTTCTTCCCATCGATCGATCTCTCCTGTGTCTTCAAAACCCGATTCCTTCGCTCCTCCGCCACACGCCCCAAACCCAAAGCATTCCCGGACCTTCTTCAACCTCCTTTCGTACTTGGTAAGCTCCTCATCAGAACCACTCTCCACATCTTCCTTCTTTTTCCTCCTCCCAGCATATATTATCCCATTCGAAGTTCATTCTTTTTCCTGGATCTGTTCTAGTCATACAATCCGGCGAAAACCCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

8.93

Isoelectric Point (pI)

73.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 14
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 192, 256
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 2 cut(s) 107, 279
AluI AGCT 2 cut(s) 107, 279
AlwI GGATC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 345
AvaII GGWCC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 114, 180
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 364
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 244, 364
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 244, 364
BpiI GAAGAC 2 cut(s) 114, 180
Bpu14I TTCGAA 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 244
Bsa29I ATCGAT 2 cut(s) 169, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 364
BseCI ATCGAT 2 cut(s) 169, 173
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 4 cut(s) 123, 201, 271, 311
BseYI CCCAGC 2 cut(s) 126, 325
Bsh1285I CGRYCG 1 cut(s) 173
BshVI ATCGAT 2 cut(s) 169, 173
BsiEI CGRYCG 1 cut(s) 173
BsiSI CCGG 2 cut(s) 244, 388
BslI CCNNNNNNNGG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 345
Bsp143I GATC 3 cut(s) 170, 174, 366
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 116
BspDI ATCGAT 2 cut(s) 169, 173
BspPI GGATC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 118
BssMI GATC 3 cut(s) 170, 174, 366
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 119
BstBI TTCGAA 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 103
BstKTI GATC 3 cut(s) 173, 177, 369
BstMBI GATC 3 cut(s) 170, 174, 366
BstMCI CGRYCG 1 cut(s) 173
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 242, 362
BstV2I GAAGAC 2 cut(s) 114, 180
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
Bsu15I ATCGAT 2 cut(s) 169, 173
BsuTUI ATCGAT 2 cut(s) 169, 173
BtsIMutI CAGTG 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 246
ClaI ATCGAT 2 cut(s) 169, 173
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 20
CviJI RGCY 3 cut(s) 107, 130, 279
CviKI_1 RGCY 3 cut(s) 107, 130, 279
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 103
DpnI GATC 3 cut(s) 172, 176, 368
DpnII GATC 3 cut(s) 170, 174, 366
DraIII CACNNNGTG 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 23
FaiI YATR 5 cut(s) 21, 59, 331, 333, 381
FatI CATG 1 cut(s) 19
FspBI CTAG 1 cut(s) 375
GsaI CCCAGC 2 cut(s) 130, 329
HapII CCGG 2 cut(s) 244, 388
Hin1II CATG 1 cut(s) 23
HinfI GANTC 2 cut(s) 23, 200
HpaII CCGG 2 cut(s) 244, 388
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 168, 214, 259, 319
HpyCH4III ACNGT 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 3 cut(s) 170, 174, 366
LmnI GCTCC 2 cut(s) 214, 284
LpnPI CCDG 9 cut(s) 96, 131, 140, 195, 257, 339, 349, 376, 401
MaeI CTAG 1 cut(s) 375
MalI GATC 3 cut(s) 172, 176, 368
MboI GATC 3 cut(s) 170, 174, 366
MboII GAAGA 6 cut(s) 106, 114, 153, 180, 244, 297
MflI RGATCY 1 cut(s) 366
MluCI AATT 2 cut(s) 36, 54
MnlI CCTC 8 cut(s) 73, 141, 144, 222, 269, 292, 329, 332
MseI TTAA 2 cut(s) 30, 72
MspI CCGG 2 cut(s) 244, 388
MspR9I CCNGG 2 cut(s) 244, 364
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 364
NciI CCSGG 1 cut(s) 244
NdeII GATC 3 cut(s) 170, 174, 366
NlaIII CATG 1 cut(s) 23
NspV TTCGAA 1 cut(s) 345
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 23, 200
PfoI TCCNGGA 2 cut(s) 242, 362
Ple19I CGATCG 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 126, 325
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 366
PvuI CGATCG 1 cut(s) 173
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 30, 72
Sau3AI GATC 3 cut(s) 170, 174, 366
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 244, 364
SetI ASST 6 cut(s) 78, 109, 160, 251, 261, 281
SfuI TTCGAA 1 cut(s) 345
SinI GGWCC 1 cut(s) 246
Sse9I AATT 2 cut(s) 36, 54
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 242, 362
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 3 cut(s) 169, 173, 345
TasI AATT 2 cut(s) 36, 54
TfiI GAWTC 2 cut(s) 23, 200
Tru1I TTAA 2 cut(s) 30, 72
Tru9I TTAA 2 cut(s) 30, 72
TspDTI ATGAA 3 cut(s) 15, 48, 341
TspGWI ACGGA 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 1 cut(s) 36
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.