RchiOBHm_Chr3g0478711

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
24410379 .. 24413921
3543 bp
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UTR
Exon/CDS
Intron
PRQ44388

Sequence Viewer

Length: 366 bp
ATGAAAGTTTCTCCTTTTTCCTATTATGTCCTCATCTTTTCTATAGGGTTTCGTTTATTCCTTCTCTCTTCCCAGATCTCTCTTCCCAGCCTCCTCCTCAAAACCATCGGTTTCTATAGAAAGCGATCTCTCAAGAGGATTCAAAACCCAATAGAAATCGATCTCGCAAGAGGATTCAAAACCCAATTCTGTCGCTCCTCCGCCACACGCCCCAAACCCAAAGCAAAACATCGATCGATCTCTCAAGAGGATTCAAAACCCAACTCCGTCGCTCCTCCGCAGCACGCTCCAAACCCAAAGCATTCCCGGATCGATCTCTCTGTCTCTTCAAAACCCAGCTCCTCATCGATGGTTTTTGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

10.88

Isoelectric Point (pI)

62.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 278
AclWI GGATC 1 cut(s) 317
AgsI TTSAA 4 cut(s) 143, 178, 255, 330
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 328
AlwI GGATC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 307
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 113, 343
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 328
BfmI CTRYAG 2 cut(s) 42, 115
BglII AGATCT 1 cut(s) 75
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 307
BpuEI CTTGAG 2 cut(s) 116, 228
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 5 cut(s) 159, 232, 236, 312, 347
BseCI ATCGAT 5 cut(s) 159, 232, 236, 312, 347
BseRI GAGGAG 5 cut(s) 83, 86, 187, 264, 331
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 2 cut(s) 86, 335
Bsh1285I CGRYCG 1 cut(s) 236
BshVI ATCGAT 5 cut(s) 159, 232, 236, 312, 347
BsiEI CGRYCG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 301
Bsp143I GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
BspACI CCGC 2 cut(s) 201, 278
BspDI ATCGAT 5 cut(s) 159, 232, 236, 312, 347
BspPI GGATC 1 cut(s) 317
BssMI GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
Bst6I CTCTTC 3 cut(s) 73, 87, 331
BstC8I GCNNGC 1 cut(s) 285
BstKTI GATC 7 cut(s) 78, 128, 163, 236, 240, 312, 316
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
BstMCI CGRYCG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 2 cut(s) 42, 115
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
Bsu15I ATCGAT 5 cut(s) 159, 232, 236, 312, 347
BsuTUI ATCGAT 5 cut(s) 159, 232, 236, 312, 347
Cac8I GCNNGC 1 cut(s) 285
ClaI ATCGAT 5 cut(s) 159, 232, 236, 312, 347
CviAII CATG 1 cut(s) 363
CviJI RGCY 2 cut(s) 90, 339
CviKI_1 RGCY 2 cut(s) 90, 339
DpnI GATC 7 cut(s) 77, 127, 162, 235, 239, 311, 315
DpnII GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
Eam1104I CTCTTC 3 cut(s) 73, 87, 331
EarI CTCTTC 3 cut(s) 73, 87, 331
EciI GGCGGA 1 cut(s) 190
FaeI CATG 1 cut(s) 366
FaiI YATR 4 cut(s) 27, 44, 117, 364
FatI CATG 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 281
GsaI CCCAGC 2 cut(s) 90, 339
HapII CCGG 1 cut(s) 307
Hin1II CATG 1 cut(s) 366
HinfI GANTC 3 cut(s) 139, 174, 251
HpaII CCGG 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 133, 245
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 366
Kzo9I GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
LmnI GCTCC 4 cut(s) 200, 277, 292, 344
LpnPI CCDG 4 cut(s) 86, 100, 320, 349
Lsp1109I GCAGC 1 cut(s) 292
MalI GATC 7 cut(s) 77, 127, 162, 235, 239, 311, 315
MboI GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
MboII GAAGA 3 cut(s) 60, 74, 318
MflI RGATCY 1 cut(s) 75
MluCI AATT 1 cut(s) 185
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 307
NdeII GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
NlaIII CATG 1 cut(s) 366
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 139, 174, 251
PfoI TCCNGGA 1 cut(s) 305
PkrI GCNGC 1 cut(s) 282
Ple19I CGATCG 1 cut(s) 236
PspFI CCCAGC 2 cut(s) 86, 335
PsuI RGATCY 1 cut(s) 75
PvuI CGATCG 1 cut(s) 236
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 7 cut(s) 75, 125, 160, 233, 237, 309, 313
ScrFI CCNGG 1 cut(s) 307
SetI ASST 1 cut(s) 341
SfcI CTRYAG 2 cut(s) 42, 115
SmlI CTYRAG 2 cut(s) 131, 243
SmoI CTYRAG 2 cut(s) 131, 243
Sse9I AATT 1 cut(s) 185
SsiI CCGC 2 cut(s) 201, 278
StyD4I CCNGG 1 cut(s) 305
TaqI TCGA 5 cut(s) 159, 232, 236, 312, 347
TasI AATT 1 cut(s) 185
TfiI GAWTC 3 cut(s) 139, 174, 251
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.