Rh5CG054700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
3944550 .. 3946789
2240 bp
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UTR
Exon/CDS
Intron
Rh5CG054700.1

Sequence Viewer

Length: 372 bp
ATGAAAGTTTCTCCTTTTTCCTATTATGTCCTCATCTTTTCTATAGGGTTTCGTCTCTTCCCAGATCTCTCTTCCCAGCGTCCTCCTCAAAACCATCGATCGATTTCGTTAAGAGCATCTCTCTTCCCAGCCTCTTCCTCAAAACCATCAGTTTCTATAGAAATCGATCTCTCAAGAGGATTCAAAACCCAATTCGGTCGCTCCTCCGCCACACGCCTCAAACCCAAAGCAAACCATCGATCGATCTCTCAAGAGGATTCAAAACCGAACTCCGTCGCTCCTCCGCCACACGCCCCAAACCCAAAGTATTCCCGGATCGATCTCTCTGTCTCTTCAAAACCCAACTCCTCATGGATGTTTTTTGGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

10.79

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 207, 284
AclWI GGATC 1 cut(s) 323
AgsI TTSAA 3 cut(s) 184, 261, 336
Alw26I GTCTC 2 cut(s) 59, 334
AlwI GGATC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 313
BccI CCATC 3 cut(s) 102, 154, 243
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 59, 334
BfmI CTRYAG 2 cut(s) 42, 156
BglII AGATCT 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuEI CTTGAG 2 cut(s) 157, 234
BpuMI CCSGG 1 cut(s) 313
Bsa29I ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
BseCI ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
BseGI GGATG 1 cut(s) 360
BseRI GAGGAG 4 cut(s) 75, 193, 270, 337
BseYI CCCAGC 2 cut(s) 75, 127
Bsh1285I CGRYCG 3 cut(s) 101, 199, 242
BshVI ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
BsiEI CGRYCG 3 cut(s) 101, 199, 242
BsiSI CCGG 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 59, 334
BsmBI CGTCTC 1 cut(s) 59
Bsp143I GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
BspACI CCGC 2 cut(s) 207, 284
BspDI ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
BspPI GGATC 1 cut(s) 323
BssMI GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
Bst6I CTCTTC 5 cut(s) 62, 76, 128, 139, 337
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 7 cut(s) 67, 101, 169, 242, 246, 318, 322
BstMAI GTCTC 2 cut(s) 59, 334
BstMBI GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
BstMCI CGRYCG 3 cut(s) 101, 199, 242
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 42, 156
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu15I ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
BsuTUI ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
BtsCI GGATG 1 cut(s) 360
ClaI ATCGAT 6 cut(s) 97, 101, 165, 238, 242, 318
CseI GACGC 1 cut(s) 68
CviAII CATG 2 cut(s) 351, 369
CviJI RGCY 1 cut(s) 131
CviKI_1 RGCY 1 cut(s) 131
DpnI GATC 7 cut(s) 66, 100, 168, 241, 245, 317, 321
DpnII GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
Eam1104I CTCTTC 5 cut(s) 62, 76, 128, 139, 337
EarI CTCTTC 5 cut(s) 62, 76, 128, 139, 337
EciI GGCGGA 2 cut(s) 196, 273
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 354, 372
FaiI YATR 5 cut(s) 27, 44, 158, 352, 370
FatI CATG 2 cut(s) 350, 368
FokI GGATG 1 cut(s) 367
GsaI CCCAGC 2 cut(s) 79, 131
HapII CCGG 1 cut(s) 313
HgaI GACGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 354, 372
HinfI GANTC 2 cut(s) 180, 257
HpaII CCGG 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 174, 251
Hpy99I CGWCG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 354, 372
Kzo9I GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
LmnI GCTCC 2 cut(s) 206, 283
LpnPI CCDG 4 cut(s) 75, 89, 141, 326
LweI GCATC 1 cut(s) 125
MalI GATC 7 cut(s) 66, 100, 168, 241, 245, 317, 321
MboI GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
MboII GAAGA 5 cut(s) 49, 63, 115, 126, 324
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 191
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 313
NciI CCSGG 1 cut(s) 313
NdeII GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
NlaIII CATG 2 cut(s) 354, 372
PfeI GAWTC 2 cut(s) 180, 257
PfoI TCCNGGA 1 cut(s) 311
Ple19I CGATCG 2 cut(s) 101, 242
PspFI CCCAGC 2 cut(s) 75, 127
PsuI RGATCY 1 cut(s) 64
PvuI CGATCG 2 cut(s) 101, 242
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 7 cut(s) 64, 98, 166, 239, 243, 315, 319
ScrFI CCNGG 1 cut(s) 313
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 2 cut(s) 42, 156
SmlI CTYRAG 2 cut(s) 172, 249
SmoI CTYRAG 2 cut(s) 172, 249
Sse9I AATT 1 cut(s) 191
SsiI CCGC 2 cut(s) 207, 284
StyD4I CCNGG 1 cut(s) 311
TaqI TCGA 6 cut(s) 97, 101, 165, 238, 242, 318
TaqII GACCGA 1 cut(s) 185
TasI AATT 1 cut(s) 191
TfiI GAWTC 2 cut(s) 180, 257
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.