Rh6DG266900

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010615
Physical Location & Seq
Forward (+)
45943016 .. 45952461
9446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG266900.1

Sequence Viewer

Length: 375 bp
ATGGAGGCCATTAATCCAGTAGCCATCGACTCGCATAATGGCAACAAAACCGAGACCGAAGCCTCCGAAGATCTATTCGAGTTCGTCAAATCCCTAGCAGCTATTTTGACCCGAATCCGTGGCTCCTCCCTACATGTGGTGGATAAGAAGGTTGTGGATGAGGAGGAGAAGCGTGAGGACCACTGGAGTTCCGATGGAGGTGGTGGAGCATTCAAGTCGGGTTCTAGAGATGCTTTTGATGTGGCTAGAGAAATTCAGGCTCAGTTTCAGAGAGCTTTCGAGTCGGGTAACGAAATAGCAAGGATGCTGGAGGTGGGAAAGCATCCATATAATCGAAAACATGGTCGGTACAAATTGGAGTTTTGCTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

124

Amino Acids

13.95

Weight (kDa)

5.73

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 80 - 114 2.1e-06 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 2 cut(s) 101, 275
AluI AGCT 2 cut(s) 101, 275
Alw26I GTCTC 1 cut(s) 47
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 252
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 178
AvaII GGWCC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 110
BccI CCATC 2 cut(s) 32, 188
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 3 cut(s) 95, 225, 246
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 124
BmsI GCATC 3 cut(s) 220, 294, 331
BpmI CTGGAG 2 cut(s) 205, 329
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 17, 188
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 163, 309, 322
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 17, 188
BseRI GAGGAG 3 cut(s) 115, 176, 179
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 17, 188
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 163, 309, 322
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 163, 309, 322
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 134, 341
CviJI RGCY 8 cut(s) 8, 23, 62, 101, 123, 245, 260, 275
CviKI_1 RGCY 8 cut(s) 8, 23, 62, 101, 123, 245, 260, 275
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 178
FaeI CATG 2 cut(s) 137, 344
FaiI YATR 5 cut(s) 36, 135, 328, 330, 342
FatI CATG 2 cut(s) 133, 340
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 3 cut(s) 170, 309, 316
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 3 cut(s) 95, 225, 246
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 2 cut(s) 205, 329
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 2 cut(s) 137, 344
HinfI GANTC 3 cut(s) 29, 114, 281
Hpy188I TCNGA 3 cut(s) 67, 193, 270
Hpy188III TCNNGA 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 142
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 2 cut(s) 137, 344
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 128, 206
LpnPI CCDG 4 cut(s) 30, 169, 242, 293
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 3 cut(s) 220, 294, 331
MaeI CTAG 3 cut(s) 95, 225, 246
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 70
MluCI AATT 2 cut(s) 252, 353
MlyI GAGTC 2 cut(s) 23, 290
MnlI CCTC 7 cut(s) 73, 136, 154, 157, 169, 191, 304
MseI TTAA 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 209
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 137, 344
NlaIV GGNNCC 1 cut(s) 124
NspI RCATGY 1 cut(s) 137
PciI ACATGT 1 cut(s) 133
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 2 cut(s) 23, 289
PpsI GAGTC 2 cut(s) 23, 289
PscI ACATGT 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 23, 290
SetI ASST 5 cut(s) 103, 153, 202, 277, 315
SfaNI GCATC 3 cut(s) 220, 294, 331
SinI GGWCC 1 cut(s) 178
Sse9I AATT 2 cut(s) 252, 353
SspMI CTAG 3 cut(s) 95, 225, 246
TaqI TCGA 4 cut(s) 27, 78, 279, 334
TaqII GACCGA 1 cut(s) 71
TasI AATT 2 cut(s) 252, 353
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 188
TseI GCWGC 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 1 cut(s) 252
XbaI TCTAGA 1 cut(s) 224
XceI RCATGY 1 cut(s) 137
XspI CTAG 3 cut(s) 95, 225, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.