Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Forward (+)

69306485 .. 69307450

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG498500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAAGTTTCTCCTTTTTCCTATTATGTCCTCATCTTTTCTATAGGGTTTCGTTTCTTCCTTCTCTCTTCGCAGCCTCCTCCTCAAAACCATCGATCGATTTCGTTAAGAGCATCTCTCTTCCCAGCCTCTTCCTCAAAACCATCAATCTCAAAACCATCGGTTTCTATAGAAATCGATCTCTCAAGAGGATTCAAAACCCAATTCGGTCGCTCCTCCGCCACACGCCCCAAACCCAAAGCAAACCATCGATCGATCTCTCAAGAGGATTCAAAACCCAACTCTGTCGCTCCTCCGCCACACGCCCCAAACCCAAAGCATTCCCGGATCGATCTCTCTGTCTCTTCAAAACCCAACTCCTCATGGATGGTTTTTGGGGTTTATGGGTCATCTTTTTTGCTCATCTATTGTCCTTGGTTTGGGTTTCATAAATTGATAACTTCGTGTTCAATACTTTTGCATAAGCTTGATTCATGGTTGGAGTTGTTTGAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

10.07

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	219, 296
AclWI	GGATC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	196, 273, 348, 450
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	5 cut(s)	99, 151, 166, 255, 361
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	496
BfmI	CTRYAG	2 cut(s)	42, 168
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpuEI	CTTGAG	2 cut(s)	169, 246
BpuMI	CCSGG	1 cut(s)	325
Bsa29I	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
BsaJI	CCNNGG	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
BseCI	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseRI	GAGGAG	5 cut(s)	69, 72, 205, 282, 349
BseXI	GCAGC	1 cut(s)	85
BseYI	CCCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	3 cut(s)	98, 211, 254
BshVI	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
BsiEI	CGRYCG	3 cut(s)	98, 211, 254
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
BspACI	CCGC	2 cut(s)	219, 296
BspDI	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
BspPI	GGATC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
BssT1I	CCWWGG	1 cut(s)	413
Bst6I	CTCTTC	4 cut(s)	73, 125, 136, 349
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	6 cut(s)	98, 181, 254, 258, 330, 334
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
BstMCI	CGRYCG	3 cut(s)	98, 211, 254
BstSCI	CCNGG	1 cut(s)	323
BstSFI	CTRYAG	2 cut(s)	42, 168
BstV1I	GCAGC	1 cut(s)	85
Bsu15I	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
BsuTUI	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
BtsCI	GGATG	1 cut(s)	372
ClaI	ATCGAT	6 cut(s)	94, 98, 177, 250, 254, 330
CviAII	CATG	2 cut(s)	363, 474
CviJI	RGCY	4 cut(s)	76, 128, 466, 493
CviKI_1	RGCY	4 cut(s)	76, 128, 466, 493
DpnI	GATC	6 cut(s)	97, 180, 253, 257, 329, 333
DpnII	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
Eam1104I	CTCTTC	4 cut(s)	73, 125, 136, 349
EarI	CTCTTC	4 cut(s)	73, 125, 136, 349
EciI	GGCGGA	2 cut(s)	208, 285
Eco130I	CCWWGG	1 cut(s)	413
Eco24I	GRGCYC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	2 cut(s)	366, 477
FaiI	YATR	8 cut(s)	27, 44, 170, 364, 384, 429, 462, 475
FatI	CATG	2 cut(s)	362, 473
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	496
GluI	GCNGC	1 cut(s)	74
GsaI	CCCAGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	2 cut(s)	366, 477
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	3 cut(s)	192, 269, 470
HpaII	CCGG	1 cut(s)	325
Hpy188III	TCNNGA	2 cut(s)	186, 263
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	460
Hsp92II	CATG	2 cut(s)	366, 477
Kzo9I	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
LmnI	GCTCC	2 cut(s)	218, 295
LpnPI	CCDG	2 cut(s)	138, 338
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	496
MalI	GATC	6 cut(s)	97, 180, 253, 257, 329, 333
MboI	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
MboII	GAAGA	5 cut(s)	49, 60, 112, 123, 336
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	2 cut(s)	203, 431
MmeI	TCCRAC	1 cut(s)	459
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
NlaIII	CATG	2 cut(s)	366, 477
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	192, 269, 470
PfoI	TCCNGGA	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	75
Ple19I	CGATCG	2 cut(s)	98, 254
PspFI	CCCAGC	1 cut(s)	124
PvuI	CGATCG	2 cut(s)	98, 254
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	6 cut(s)	95, 178, 251, 255, 327, 331
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	2 cut(s)	42, 168
SmlI	CTYRAG	2 cut(s)	184, 261
SmoI	CTYRAG	2 cut(s)	184, 261
Sse9I	AATT	2 cut(s)	203, 431
SsiI	CCGC	2 cut(s)	219, 296
SspMI	CTAG	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	413
TaqI	TCGA	6 cut(s)	94, 98, 177, 250, 254, 330
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	203, 431
TfiI	GAWTC	3 cut(s)	192, 269, 470
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	17, 416, 462
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.