Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Forward (+)

3142948 .. 3143373

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG047900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGGGATTCGCTCAAAACGCCGAGACAACGCAGGCAGGGTTGGCCGAGACGGTGATGAACGGGTTCAAGCCGGAGGACATCCCAGTGTATAGGGAGCTGGTGAAAGAGTTTGCAGTGTGTGACAGGTGGTTTGCTTCTGTGCCGGCGTCGACGCAGCCGAACCGGCAGTACGTGCACTCGGCGACGTCGCATGGACTTTCCGGGACTGATACGAAGTTGCTGATTGAAGGGCTGCCGCAGAAGACTATATTTGAGTCCATGGAGGGGGCTGGCCATTCTTTTGGAATTTACTATCAGACCCCTCCTGCCACACTTTTGTACAGGAACTTCTCTGCAGAACGTGACCATATACTACAAGGCTGGTTATGCTGCGTGGCTTGGAGAGAGTCGTCATTGATGTCCATTACTATAACCTCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009405 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030054 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034480 GO:0035821 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0050896 GO:0051701 GO:0051704 GO:0051716 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0052642 GO:0055044 GO:0071496 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

5.27

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	1 - 102	2.3e-26	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	239
AcoI	YGGCCR	2 cut(s)	45, 274
AcsI	RAATTY	1 cut(s)	288
AcyI	GRCGYC	2 cut(s)	149, 188
AfaI	GTAC	2 cut(s)	173, 323
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	70, 230
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	20, 44
Alw44I	GTGCAC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	45, 274
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	157, 235, 372
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp700I	GAANNNNTTC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	67, 115
BaeGI	GKGCMC	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	169, 222, 359
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	20, 44
BfmI	CTRYAG	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	4 cut(s)	158, 236, 239, 373
BlsI	GCNGC	4 cut(s)	159, 237, 240, 374
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BmrI	ACTGGG	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	175
BsaHI	GRCGYC	2 cut(s)	149, 188
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	2 cut(s)	145, 165
Bse1I	ACTGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	169, 222, 359
BshFI	GGCC	2 cut(s)	47, 276
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	4 cut(s)	74, 146, 166, 204
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	2 cut(s)	20, 44
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	47, 276
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	2 cut(s)	47, 276
BspMAI	CTGCAG	1 cut(s)	340
BsrFI	RCCGGY	2 cut(s)	145, 165
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	2 cut(s)	145, 165
BssECI	CCNNGG	1 cut(s)	261
BssNI	GRCGYC	2 cut(s)	149, 188
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	55
BstACI	GRCGYC	2 cut(s)	149, 188
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	36, 147, 274
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	81
BstMAI	GTCTC	2 cut(s)	20, 44
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 44, 166, 175, 369
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	169, 222, 359
BstV2I	GAAGAC	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	47, 276
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	93, 123
Cac8I	GCNNGC	3 cut(s)	36, 147, 274
Cfr10I	RCCGGY	2 cut(s)	145, 165
CseI	GACGC	2 cut(s)	138, 163
Csp6I	GTAC	2 cut(s)	172, 322
CviAII	CATG	2 cut(s)	194, 262
CviJI	RGCY	9 cut(s)	47, 73, 100, 160, 235, 272, 276, 363, 380
CviKI_1	RGCY	9 cut(s)	47, 73, 100, 160, 235, 272, 276, 363, 380
CviQI	GTAC	2 cut(s)	172, 322
EaeI	YGGCCR	2 cut(s)	45, 274
Eco130I	CCWWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	2 cut(s)	197, 265
FaiI	YATR	8 cut(s)	93, 195, 251, 263, 351, 353, 370, 413
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	193, 261
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	4 cut(s)	158, 236, 239, 373
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	158, 236, 239, 373
GluI	GCNGC	4 cut(s)	158, 236, 239, 373
HaeIII	GGCC	2 cut(s)	47, 276
HapII	CCGG	4 cut(s)	74, 146, 166, 204
HgaI	GACGC	2 cut(s)	138, 163
Hin1I	GRCGYC	2 cut(s)	149, 188
Hin1II	CATG	2 cut(s)	197, 265
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	3 cut(s)	9, 257, 389
HpaII	CCGG	4 cut(s)	74, 146, 166, 204
HphI	GGTGA	2 cut(s)	67, 115
Hpy166II	GTNNAC	2 cut(s)	153, 178
Hpy188I	TCNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	153, 178
Hpy99I	CGWCG	4 cut(s)	154, 157, 190, 193
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	3 cut(s)	174, 188, 343
HpyCH4V	TGCA	3 cut(s)	116, 178, 338
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 44, 166, 175, 369
HpySE526I	ACGT	3 cut(s)	174, 188, 343
Hsp92I	GRCGYC	2 cut(s)	149, 188
Hsp92II	CATG	2 cut(s)	197, 265
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	3 cut(s)	169, 222, 359
MaeII	ACGT	3 cut(s)	174, 188, 343
MaeIII	GTNAC	2 cut(s)	122, 344
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	266, 398
MnlI	CCTC	3 cut(s)	70, 259, 315
Mox20I	TGGCCA	1 cut(s)	276
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	4 cut(s)	74, 146, 166, 204
MspR9I	CCNGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	5 cut(s)	20, 44, 166, 175, 369
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	197, 265
NmeAIII	GCCGAG	3 cut(s)	49, 73, 161
NmuCI	GTSAC	2 cut(s)	122, 344
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	159, 237, 240, 374
PleI	GAGTC	2 cut(s)	265, 397
PpsI	GAGTC	2 cut(s)	265, 397
Ppu21I	YACGTR	1 cut(s)	175
PsrI	GAACNNNNNNTAC	2 cut(s)	155, 187
PstI	CTGCAG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	173, 323
RsaNI	GTAC	2 cut(s)	172, 322
RseI	CAYNNNNRTG	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	151
SatI	GCNGC	4 cut(s)	158, 236, 239, 373
SchI	GAGTC	2 cut(s)	266, 398
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	102, 131, 177, 191, 346, 419
SfcI	CTRYAG	1 cut(s)	336
SgrDI	CGTCGACG	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	3 cut(s)	177, 191, 346
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	288
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	9
TscAI	CASTG	2 cut(s)	93, 123
TseFI	GTSAC	2 cut(s)	122, 344
TseI	GCWGC	3 cut(s)	157, 235, 372
Tsp45I	GTSAC	2 cut(s)	122, 344
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	93, 123
VneI	GTGCAC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.