Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8405135.1

Orthogroup ID

OG0010615

Physical Location & Seq

Genomic Coordinates Forward (+)

17 .. 655

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8405135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggtttcagagtcgagcagcagtacaagtagctgccccatcaaaacggtggtggttctggtgcaagagaaccgctccttcgaccacatgctcgggtggatgaagtccctaaaccctgacatcaacggtgtcaccggatccgagtccaacctcatttccacctccgaccctaactccaaacgtgtcttcttcggcgacaactccgcctacgtcgaccctgaccctggccacgccatccaagctgtctacgagcaagtcttcggccagccatggtcggaggcctcggtgtccaataacctcgccccaacaatggagggattcgctcaaaacgctgagacaacgcaggcggggttggccgagacggtgatgaacgggttcaagccggagaacattccagtgtatagggagctggtgaaggagtttgcagtgtgtgacaggtggtttgcttctgtgccggcgtcgacgcagccgaaccggcagtacgtgcactcggcgacgtcgcatggactttccgggactgatacgaagttgctgattgaagggctgccgcagaagacaatatttgagtccatggaggaggctggccattcttttggaatttactatcagacccctccttccacacttctgtacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0004620 GO:0004629 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008081 GO:0008150 GO:0008152 GO:0009056 GO:0009267 GO:0009395 GO:0009405 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016042 GO:0016298 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030054 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034480 GO:0035821 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0050896 GO:0051701 GO:0051704 GO:0051716 GO:0051817 GO:0052008 GO:0052043 GO:0052111 GO:0052185 GO:0052188 GO:0052368 GO:0052642 GO:0055044 GO:0071496 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

212

Amino Acids

23.21

Weight (kDa)

4.86

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344681 RchiOBHm_Chr2g0107051 RchiOBHm_Chr3g0478711
rosa_multiflora	Rmu_co8405135.1_g000001 Rmu_sc0002160.1_g000011 Rmu_sc0002160.1_g000014
rosa_roxburghii	Rroxscaffold_2G00125350 Rroxscaffold_2G00125360 Rroxscaffold_3G00234130 Rroxscaffold_5G00357000
rosa_samantha	Rh1AG152400 Rh1CG143400 Rh3AG045500 Rh3BG047900 Rh5CG054700 Rh5CG152100 Rh5CG498500 Rh6DG266900
rosa_wichuraiana	Rw4G036280 Rw5G006630 Rw6G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	500
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	3 cut(s)	213, 246, 461
AciI	CCGC	4 cut(s)	73, 204, 347, 548
AclWI	GGATC	2 cut(s)	132, 145
AcoI	YGGCCR	4 cut(s)	226, 262, 354, 583
AcsI	RAATTY	1 cut(s)	597
AcyI	GRCGYC	2 cut(s)	458, 497
AfaI	GTAC	3 cut(s)	25, 482, 632
AfiI	CCNNNNNNNGG	2 cut(s)	224, 310
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	379, 539
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	33, 242, 409
AluI	AGCT	3 cut(s)	33, 242, 409
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	2 cut(s)	329, 353
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	132, 145
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	5 cut(s)	226, 262, 279, 354, 583
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	4 cut(s)	18, 33, 466, 544
ApoI	RAATTY	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	3 cut(s)	124, 376, 424
AvaI	CYCGRG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	489
BalI	TGGCCA	2 cut(s)	228, 585
BamHI	GGATCC	1 cut(s)	137
BbsI	GAAGAC	3 cut(s)	178, 250, 560
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	20, 30, 478, 531
BccI	CCATC	2 cut(s)	47, 242
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	329, 353
BglI	GCCNNNNNGGC	1 cut(s)	475
BisI	GCNGC	5 cut(s)	19, 34, 467, 545, 548
BlsI	GCNGC	5 cut(s)	20, 35, 468, 546, 549
Bme1390I	CCNGG	2 cut(s)	225, 514
BmeT110I	CYCGRG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	225, 514
BpiI	GAAGAC	3 cut(s)	178, 250, 560
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpuMI	CCSGG	1 cut(s)	514
BsaAI	YACGTR	1 cut(s)	484
BsaHI	GRCGYC	2 cut(s)	458, 497
BsaJI	CCNNGG	4 cut(s)	223, 269, 282, 570
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 310
Bse118I	RCCGGY	2 cut(s)	454, 474
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	4 cut(s)	223, 269, 282, 570
BseGI	GGATG	2 cut(s)	105, 234
BseLI	CCNNNNNNNGG	2 cut(s)	224, 310
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	20, 30, 478, 531
BshFI	GGCC	5 cut(s)	228, 264, 281, 356, 585
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	5 cut(s)	135, 383, 455, 475, 513
BslFI	GGGAC	2 cut(s)	91, 529
BslI	CCNNNNNNNGG	2 cut(s)	224, 310
BsmAI	GTCTC	2 cut(s)	329, 353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	91, 529
BsnI	GGCC	5 cut(s)	228, 264, 281, 356, 585
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	630
Bsp143I	GATC	1 cut(s)	137
Bsp19I	CCATGG	2 cut(s)	269, 570
BspACI	CCGC	4 cut(s)	73, 204, 347, 548
BspANI	GGCC	5 cut(s)	228, 264, 281, 356, 585
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	132, 145
BsrBI	CCGCTC	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	454, 474
BsrGI	TGTACA	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	395
BssAI	RCCGGY	2 cut(s)	454, 474
BssECI	CCNNGG	4 cut(s)	223, 269, 282, 570
BssMI	GATC	1 cut(s)	137
BssNI	GRCGYC	2 cut(s)	458, 497
BssT1I	CCWWGG	2 cut(s)	269, 570
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	49, 128, 364
BstACI	GRCGYC	2 cut(s)	458, 497
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	4 cut(s)	266, 345, 456, 583
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	2 cut(s)	269, 570
BstF5I	GGATG	2 cut(s)	105, 234
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	2 cut(s)	329, 353
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 329, 353, 475, 484
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	223, 512
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	20, 30, 478, 531
BstV2I	GAAGAC	3 cut(s)	178, 250, 560
BstX2I	RGATCY	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	5 cut(s)	228, 264, 281, 356, 585
BtgI	CCRYGG	2 cut(s)	269, 570
BtsCI	GGATG	2 cut(s)	105, 234
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	402, 432
Cac8I	GCNNGC	4 cut(s)	266, 345, 456, 583
Cfr10I	RCCGGY	2 cut(s)	454, 474
CseI	GACGC	2 cut(s)	447, 472
Csp6I	GTAC	3 cut(s)	24, 481, 631
CviAII	CATG	4 cut(s)	88, 270, 503, 571
CviQI	GTAC	3 cut(s)	24, 481, 631
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EaeI	YGGCCR	4 cut(s)	226, 262, 354, 583
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	269, 570
Eco147I	AGGCCT	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	269, 570
ErhI	CCWWGG	2 cut(s)	269, 570
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	4 cut(s)	91, 273, 506, 574
FaiI	YATR	5 cut(s)	89, 271, 402, 504, 572
FaqI	GGGAC	2 cut(s)	91, 529
FatI	CATG	4 cut(s)	87, 269, 502, 570
FauI	CCCGC	1 cut(s)	340
FblI	GTMKAC	3 cut(s)	213, 246, 461
Fnu4HI	GCNGC	5 cut(s)	19, 34, 467, 545, 548
FokI	GGATG	2 cut(s)	112, 221
Fsp4HI	GCNGC	5 cut(s)	19, 34, 467, 545, 548
GluI	GCNGC	5 cut(s)	19, 34, 467, 545, 548
HaeIII	GGCC	5 cut(s)	228, 264, 281, 356, 585
HapII	CCGG	5 cut(s)	135, 383, 455, 475, 513
HgaI	GACGC	2 cut(s)	447, 472
Hin1I	GRCGYC	2 cut(s)	458, 497
Hin1II	CATG	4 cut(s)	91, 273, 506, 574
HincII	GTYRAC	2 cut(s)	214, 462
HindII	GTYRAC	2 cut(s)	214, 462
HinfI	GANTC	4 cut(s)	11, 143, 318, 566
HpaII	CCGG	5 cut(s)	135, 383, 455, 475, 513
HphI	GGTGA	3 cut(s)	124, 376, 424
Hpy166II	GTNNAC	4 cut(s)	214, 247, 462, 487
Hpy188I	TCNGA	5 cut(s)	10, 142, 166, 277, 609
Hpy8I	GTNNAC	4 cut(s)	214, 247, 462, 487
Hpy99I	CGWCG	5 cut(s)	215, 463, 466, 499, 502
HpyAV	CCTTC	4 cut(s)	88, 409, 533, 627
HpyCH4III	ACNGT	3 cut(s)	49, 128, 364
HpyCH4IV	ACGT	4 cut(s)	181, 210, 483, 497
HpyCH4V	TGCA	3 cut(s)	64, 425, 487
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 329, 353, 475, 484
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	4 cut(s)	181, 210, 483, 497
Hsp92I	GRCGYC	2 cut(s)	458, 497
Hsp92II	CATG	4 cut(s)	91, 273, 506, 574
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	80, 406
Lsp1109I	GCAGC	4 cut(s)	20, 30, 478, 531
MaeII	ACGT	4 cut(s)	181, 210, 483, 497
MaeIII	GTNAC	2 cut(s)	130, 431
MalI	GATC	1 cut(s)	139
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	1 cut(s)	137
MboII	GAAGA	4 cut(s)	178, 181, 250, 565
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	2 cut(s)	228, 585
MluCI	AATT	1 cut(s)	597
MluNI	TGGCCA	2 cut(s)	228, 585
MlyI	GAGTC	3 cut(s)	20, 152, 575
MmeI	TCCRAC	3 cut(s)	171, 189, 255
MnlI	CCTC	9 cut(s)	161, 172, 271, 292, 307, 308, 568, 571, 624
Mox20I	TGGCCA	2 cut(s)	228, 585
MroNI	GCCGGC	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	374
MscI	TGGCCA	2 cut(s)	228, 585
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	2 cut(s)	228, 585
MspI	CCGG	5 cut(s)	135, 383, 455, 475, 513
MspR9I	CCNGG	2 cut(s)	225, 514
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	5 cut(s)	239, 329, 353, 475, 484
NaeI	GCCGGC	1 cut(s)	456
NciI	CCSGG	1 cut(s)	514
NcoI	CCATGG	2 cut(s)	269, 570
NdeII	GATC	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	4 cut(s)	91, 273, 506, 574
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	2 cut(s)	382, 470
NmuCI	GTSAC	2 cut(s)	130, 431
NspI	RCATGY	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	318
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	20, 35, 468, 546, 549
PleI	GAGTC	3 cut(s)	19, 151, 574
PpsI	GAGTC	3 cut(s)	19, 151, 574
Ppu21I	YACGTR	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	139
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	3 cut(s)	25, 482, 632
RsaNI	GTAC	3 cut(s)	24, 481, 631
RseI	CAYNNNNRTG	1 cut(s)	395
SalI	GTCGAC	2 cut(s)	212, 460
SatI	GCNGC	5 cut(s)	19, 34, 467, 545, 548
Sau3AI	GATC	1 cut(s)	137
SchI	GAGTC	3 cut(s)	20, 152, 575
ScrFI	CCNGG	2 cut(s)	225, 514
SduI	GDGCHC	1 cut(s)	489
SgrDI	CGTCGACG	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	597
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	4 cut(s)	73, 204, 347, 548
SspI	AATATT	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	223, 512
StyI	CCWWGG	2 cut(s)	269, 570
TaaI	ACNGT	3 cut(s)	49, 128, 364
TaiI	ACGT	4 cut(s)	184, 213, 486, 500
TaqI	TCGA	4 cut(s)	14, 81, 213, 461
TasI	AATT	1 cut(s)	597
TatI	WGTACW	2 cut(s)	23, 630
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	2 cut(s)	402, 432
TseFI	GTSAC	2 cut(s)	130, 431
TseI	GCWGC	4 cut(s)	18, 33, 466, 544
Tsp45I	GTSAC	2 cut(s)	130, 431
TspDTI	ATGAA	2 cut(s)	116, 383
TspRI	CASTG	2 cut(s)	402, 432
VneI	GTGCAC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmiI	GTMKAC	3 cut(s)	213, 246, 461
XmnI	GAANNNNTTC	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.