Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Reverse (-)

55800621 .. 55801268

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGTTACAAACCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGGCCGACCAATAACCGGTGGACTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTACGACAGGGCGCTTAAGAACCCAACTCCAGAGCAGATTCAAGGGATCTGTCTCCATCTGAAACCGTATGGGCAGATCGAGAACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAGGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGGTCCATTGATCTGAACTTTGGTTCCACTGATTCCACTGGTTCTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTCACGTGTCGGCTATGGGGTTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

215

Amino Acids

23.78

Weight (kDa)

4.93

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	3.7e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	576, 585
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	6 cut(s)	194, 316, 324, 337, 408, 469
AcsI	RAATTY	2 cut(s)	284, 427
AcvI	CACGTG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	93, 527
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	439
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	182, 503
AhlI	ACTAGT	2 cut(s)	335, 401
AjnI	CCWGG	2 cut(s)	129, 492
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	2 cut(s)	136, 610
AluI	AGCT	2 cut(s)	136, 610
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	6 cut(s)	194, 316, 324, 337, 408, 469
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	284, 427
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	2 cut(s)	233, 507
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	482, 542
AvaII	GGWCC	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	440
BbsI	GAAGAC	2 cut(s)	226, 560
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	204, 344, 452
BciT130I	CCWGG	2 cut(s)	131, 494
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	335, 401
BfaI	CTAG	2 cut(s)	336, 402
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	51, 577
BlpI	GCTNAGC	1 cut(s)	611
BlsI	GCNGC	2 cut(s)	52, 578
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	3 cut(s)	55, 131, 494
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	3 cut(s)	245, 331, 379
BmrFI	CCNGG	3 cut(s)	55, 131, 494
BmsI	GCATC	2 cut(s)	51, 622
BpiI	GAAGAC	2 cut(s)	226, 560
BpmI	CTGGAG	2 cut(s)	113, 153
Bpu1102I	GCTNAGC	1 cut(s)	611
BpuEI	CTTGAG	2 cut(s)	239, 626
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	27, 564
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 527
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	131, 494
BseCI	ATCGAT	1 cut(s)	464
BseDI	CCNNGG	2 cut(s)	27, 564
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	93, 527
BseMII	CTCAG	1 cut(s)	625
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	44, 495
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	54, 94
BslI	CCNNNNNNNGG	2 cut(s)	93, 527
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp1720I	GCTNAGC	1 cut(s)	611
BspACI	CCGC	2 cut(s)	576, 585
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	624
BspDI	ATCGAT	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	245, 331, 379
BspPI	GGATC	6 cut(s)	194, 316, 324, 337, 408, 469
BspTI	CTTAAG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	27, 564
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	131, 494
Bst4CI	ACNGT	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	119, 611, 645
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 582, 641
BstNI	CCWGG	2 cut(s)	131, 494
BstSCI	CCNGG	3 cut(s)	53, 129, 492
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	226, 560
BstX2I	RGATCY	4 cut(s)	186, 308, 329, 413
BstYI	RGATCY	4 cut(s)	186, 308, 329, 413
Bsu15I	ATCGAT	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	464
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	381, 390
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	405
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	5 cut(s)	469, 523, 527, 550, 640
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	3 cut(s)	119, 611, 645
Ecl136II	GAGCTC	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	610
Eco72I	CACGTG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	129, 492
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	612
FaeI	CATG	5 cut(s)	472, 526, 530, 553, 643
FaiI	YATR	8 cut(s)	210, 450, 470, 524, 528, 551, 582, 641
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	5 cut(s)	468, 522, 526, 549, 639
Fnu4HI	GCNGC	2 cut(s)	51, 577
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	2 cut(s)	51, 577
FspBI	CTAG	2 cut(s)	336, 402
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	51, 577
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	113, 153
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 94
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	472, 526, 530, 553, 643
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	100, 123, 178, 386
HpaII	CCGG	2 cut(s)	54, 94
HphI	GGTGA	2 cut(s)	482, 542
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	201, 291, 369, 565
Hpy188III	TCNNGA	5 cut(s)	170, 220, 247, 263, 314
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	3 cut(s)	231, 294, 439
HpyCH4V	TGCA	2 cut(s)	526, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 582, 641
HpyF3I	CTNAG	3 cut(s)	119, 611, 645
HpySE526I	ACGT	3 cut(s)	231, 294, 439
Hsp92II	CATG	5 cut(s)	472, 526, 530, 553, 643
HspAI	GCGC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	51, 622
MaeI	CTAG	2 cut(s)	336, 402
MaeII	ACGT	3 cut(s)	231, 294, 439
MaeIII	GTNAC	2 cut(s)	6, 435
MboII	GAAGA	2 cut(s)	226, 565
MflI	RGATCY	4 cut(s)	186, 308, 329, 413
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	3 cut(s)	284, 322, 427
MlyI	GAGTC	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	528
MroXI	GAANNNNTTC	2 cut(s)	233, 507
MseI	TTAA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	2 cut(s)	54, 94
MspR9I	CCNGG	3 cut(s)	55, 131, 494
MvaI	CCWGG	2 cut(s)	131, 494
MwoI	GCNNNNNNNGC	3 cut(s)	79, 582, 641
NciI	CCSGG	1 cut(s)	55
NlaIII	CATG	5 cut(s)	472, 526, 530, 553, 643
NlaIV	GGNNCC	3 cut(s)	245, 331, 379
NmuCI	GTSAC	1 cut(s)	435
NsiI	ATGCAT	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	233, 507
PfeI	GAWTC	3 cut(s)	123, 178, 386
PfoI	TCCNGGA	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	52, 578
PleI	GAGTC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	440
Psp124BI	GAGCTC	1 cut(s)	612
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	129, 492
PspCI	CACGTG	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	129, 492
PspN4I	GGNNCC	3 cut(s)	245, 331, 379
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	4 cut(s)	186, 308, 329, 413
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	612
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	51, 577
Sau96I	GGNCC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	55, 131, 494
SduI	GDGCHC	1 cut(s)	612
SetI	ASST	8 cut(s)	138, 234, 255, 297, 359, 442, 574, 612
SfaNI	GCATC	2 cut(s)	51, 622
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	3 cut(s)	155, 254, 605
SmoI	CTYRAG	3 cut(s)	155, 254, 605
SpeI	ACTAGT	2 cut(s)	335, 401
Sse9I	AATT	3 cut(s)	284, 322, 427
SsiI	CCGC	2 cut(s)	576, 585
SspMI	CTAG	2 cut(s)	336, 402
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	3 cut(s)	53, 129, 492
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	3 cut(s)	234, 297, 442
TaqI	TCGA	3 cut(s)	219, 315, 464
TasI	AATT	3 cut(s)	284, 322, 427
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	123, 178, 386
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	388, 397
TseFI	GTSAC	1 cut(s)	435
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	2 cut(s)	388, 397
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	2 cut(s)	284, 427
XmnI	GAANNNNTTC	2 cut(s)	233, 507
XspI	CTAG	2 cut(s)	336, 402
ZrmI	AGTACT	1 cut(s)	406
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.