Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002709.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

140931 .. 141398

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002709.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggaaccacgaactctacaactaatggaacttcaaacccagcaacaaatggaactacaagcccagcaacccaccgaggagggaggaagcaaccaagcagccgggagtagtgccaacacgcctatcaggccgactactaaccggtggactcccacaccagctcaactaagaatcctccaagagctttactatgacaaggtgcttaaaaacccaactccagagcagattcaaaagatctgccttcatctgcagcaatatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaaattcggaacgttcggcctcaacccatccggggctgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

123

Amino Acids

14.42

Weight (kDa)

9.3

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	35, 230, 328
AluBI	AGCT	2 cut(s)	161, 184
AluI	AGCT	2 cut(s)	161, 184
AoxI	GGCC	2 cut(s)	128, 347
ApeKI	GCWGC	3 cut(s)	98, 250, 366
ApoI	RAATTY	1 cut(s)	333
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuC2I	CCSGG	2 cut(s)	103, 362
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	110, 262, 353
BccI	CCATC	1 cut(s)	365
BcnI	CCSGG	2 cut(s)	103, 362
BfmI	CTRYAG	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	3 cut(s)	99, 251, 367
BlsI	GCNGC	3 cut(s)	100, 252, 368
Bme1390I	CCNGG	2 cut(s)	103, 362
BmiI	GGNNCC	2 cut(s)	6, 293
BmrFI	CCNGG	2 cut(s)	103, 362
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	103, 362
BsaJI	CCNNGG	2 cut(s)	75, 361
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse118I	RCCGGY	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	75, 361
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	110, 262, 353
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	2 cut(s)	130, 349
BshTI	ACCGGT	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	102, 142, 361
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	2 cut(s)	130, 349
Bsp143I	GATC	2 cut(s)	234, 264
BspANI	GGCC	2 cut(s)	130, 349
BspLI	GGNNCC	2 cut(s)	6, 293
BspMAI	CTGCAG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	75, 361
BssMI	GATC	2 cut(s)	234, 264
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	357
BstKTI	GATC	2 cut(s)	237, 267
BstMBI	GATC	2 cut(s)	234, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 259
BstSCI	CCNGG	2 cut(s)	101, 360
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	110, 262, 353
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	130, 349
BtsCI	GGATG	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	141
CviJI	RGCY	8 cut(s)	62, 101, 130, 161, 184, 308, 349, 366
CviKI_1	RGCY	8 cut(s)	62, 101, 130, 161, 184, 308, 349, 366
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	236, 266
DpnII	GATC	2 cut(s)	234, 264
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
FaiI	YATR	2 cut(s)	192, 258
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
Fnu4HI	GCNGC	3 cut(s)	99, 251, 367
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	99, 251, 367
GluI	GCNGC	3 cut(s)	99, 251, 367
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	130, 349
HapII	CCGG	3 cut(s)	102, 142, 361
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	3 cut(s)	102, 142, 361
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	3 cut(s)	218, 295, 311
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	251, 322
HpyCH4IV	ACGT	2 cut(s)	279, 342
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 259
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	279, 342
Kzo9I	GATC	2 cut(s)	234, 264
LpnPI	CCDG	8 cut(s)	53, 77, 112, 115, 155, 171, 231, 308
Lsp1109I	GCAGC	3 cut(s)	110, 262, 353
MaeII	ACGT	2 cut(s)	279, 342
MalI	GATC	2 cut(s)	236, 266
MboI	GATC	2 cut(s)	234, 264
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	8 cut(s)	70, 73, 77, 185, 262, 309, 311, 360
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	204
MspI	CCGG	3 cut(s)	102, 142, 361
MspR9I	CCNGG	2 cut(s)	103, 362
MwoI	GCNNNNNNNGC	2 cut(s)	127, 259
NciI	CCSGG	2 cut(s)	103, 362
NdeII	GATC	2 cut(s)	234, 264
NlaIV	GGNNCC	2 cut(s)	6, 293
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	171, 226
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	3 cut(s)	100, 252, 368
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp1406I	AACGTT	1 cut(s)	342
PspFI	CCCAGC	2 cut(s)	39, 63
PspN4I	GGNNCC	2 cut(s)	6, 293
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	99, 251, 367
Sau3AI	GATC	2 cut(s)	234, 264
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	103, 362
SetI	ASST	6 cut(s)	163, 186, 201, 282, 303, 345
SfcI	CTRYAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	101, 360
TaiI	ACGT	2 cut(s)	282, 345
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	3 cut(s)	98, 250, 366
TspDTI	ATGAA	1 cut(s)	233
XapI	RAATTY	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.