Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Reverse (-)

38337816 .. 38338394

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGGCCGACCAATAACCGGTGGACTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTATGACAGGGCGCTTAGATCTCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTTATCTGCAACAATATGGGCAGATTGAGGGCAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAGGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGACCCACTAGTTCTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTCACGTGTCGGCTATGGTGCTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTAGTGGCTCTCGCATTTCCCTTGAACTCATCCTCAACTCCTACGGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

192

Amino Acids

21.55

Weight (kDa)

4.92

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	3.9e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	3 cut(s)	316, 351, 412
AcsI	RAATTY	2 cut(s)	284, 370
AcvI	CACGTG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	2 cut(s)	93, 470
AflIII	ACRYGT	1 cut(s)	382
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	182, 446, 539
AhlI	ACTAGT	2 cut(s)	335, 344
AjnI	CCWGG	2 cut(s)	129, 435
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AlwI	GGATC	3 cut(s)	316, 351, 412
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	284, 370
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	2 cut(s)	233, 450
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	425, 485
AvaII	GGWCC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	383
BbsI	GAAGAC	2 cut(s)	226, 503
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	2 cut(s)	131, 437
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	2 cut(s)	335, 344
BfaI	CTAG	2 cut(s)	336, 345
BfoI	RGCGCY	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	158, 186
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	3 cut(s)	55, 131, 437
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	245, 331
BmrFI	CCNGG	3 cut(s)	55, 131, 437
BmsI	GCATC	2 cut(s)	51, 553
BpiI	GAAGAC	2 cut(s)	226, 503
BpmI	CTGGAG	2 cut(s)	113, 153
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	27, 507
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 470
Bse118I	RCCGGY	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	131, 437
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	27, 507
BseGI	GGATG	2 cut(s)	42, 543
BseLI	CCNNNNNNNGG	2 cut(s)	93, 470
BseRI	GAGGAG	2 cut(s)	44, 438
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	54, 94
BslI	CCNNNNNNNGG	2 cut(s)	93, 470
BsnI	GGCC	1 cut(s)	82
Bsp143I	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
BspANI	GGCC	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	245, 331
BspPI	GGATC	3 cut(s)	316, 351, 412
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	27, 507
BssMI	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	131, 437
BstBAI	YACGTR	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	119, 155, 576
BstF5I	GGATG	2 cut(s)	42, 543
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	9 cut(s)	115, 161, 189, 311, 319, 359, 367, 407, 411
BstMBI	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 572
BstNI	CCWGG	2 cut(s)	131, 437
BstSCI	CCNGG	3 cut(s)	53, 129, 435
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	226, 503
BstX2I	RGATCY	4 cut(s)	158, 186, 308, 356
BstYI	RGATCY	4 cut(s)	158, 186, 308, 356
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	42, 543
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	329
ClaI	ATCGAT	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	5 cut(s)	412, 466, 470, 493, 571
CviJI	RGCY	8 cut(s)	14, 53, 82, 136, 260, 390, 522, 575
CviKI_1	RGCY	8 cut(s)	14, 53, 82, 136, 260, 390, 522, 575
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	3 cut(s)	119, 155, 576
DpnI	GATC	9 cut(s)	114, 160, 188, 310, 318, 358, 366, 406, 410
DpnII	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
Eco47I	GGWCC	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	129, 435
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	5 cut(s)	415, 469, 473, 496, 574
FaiI	YATR	8 cut(s)	144, 210, 393, 413, 467, 471, 494, 572
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	5 cut(s)	411, 465, 469, 492, 570
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	29, 530
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	336, 345
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	113, 153
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 94
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	415, 469, 473, 496, 574
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	2 cut(s)	54, 94
HphI	GGTGA	2 cut(s)	425, 485
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	291, 508
Hpy188III	TCNNGA	5 cut(s)	170, 182, 247, 263, 314
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	461
HpyCH4IV	ACGT	3 cut(s)	231, 294, 382
HpyCH4V	TGCA	3 cut(s)	202, 469, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 572
HpyF3I	CTNAG	3 cut(s)	119, 155, 576
HpySE526I	ACGT	3 cut(s)	231, 294, 382
Hsp92II	CATG	5 cut(s)	415, 469, 473, 496, 574
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	51, 553
MaeI	CTAG	2 cut(s)	336, 345
MaeII	ACGT	3 cut(s)	231, 294, 382
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	9 cut(s)	114, 160, 188, 310, 318, 358, 366, 406, 410
MboI	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
MboII	GAAGA	2 cut(s)	226, 508
MflI	RGATCY	4 cut(s)	158, 186, 308, 356
MluCI	AATT	4 cut(s)	5, 284, 322, 370
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	188
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	2 cut(s)	233, 450
MspI	CCGG	2 cut(s)	54, 94
MspR9I	CCNGG	3 cut(s)	55, 131, 437
MvaI	CCWGG	2 cut(s)	131, 437
MwoI	GCNNNNNNNGC	2 cut(s)	79, 572
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
NlaIII	CATG	5 cut(s)	415, 469, 473, 496, 574
NlaIV	GGNNCC	2 cut(s)	245, 331
NmuCI	GTSAC	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	233, 450
PfeI	GAWTC	2 cut(s)	123, 178
PfoI	TCCNGGA	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	94
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	383
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	129, 435
PspCI	CACGTG	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	129, 435
PspN4I	GGNNCC	2 cut(s)	245, 331
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	4 cut(s)	158, 186, 308, 356
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	9 cut(s)	112, 158, 186, 308, 316, 356, 364, 404, 408
Sau96I	GGNCC	1 cut(s)	329
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	55, 131, 437
SetI	ASST	6 cut(s)	138, 234, 255, 297, 385, 517
SfaNI	GCATC	2 cut(s)	51, 553
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	2 cut(s)	335, 344
Sse9I	AATT	4 cut(s)	5, 284, 322, 370
SspMI	CTAG	2 cut(s)	336, 345
StyD4I	CCNGG	3 cut(s)	53, 129, 435
TaiI	ACGT	3 cut(s)	234, 297, 385
TaqI	TCGA	2 cut(s)	315, 407
TasI	AATT	4 cut(s)	5, 284, 322, 370
TatI	WGTACW	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	123, 178
TseFI	GTSAC	1 cut(s)	378
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	284, 370
XmnI	GAANNNNTTC	2 cut(s)	233, 450
XspI	CTAG	2 cut(s)	336, 345
ZrmI	AGTACT	1 cut(s)	349
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.