Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

53139926 .. 53140486

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTGCCAACATGCCTATCAGGCCGACCAATAACCGGTGGACTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTACGACAGGGCGCTTAAGAACCCAACTCCAGAGCAGATTCAAGGGATCTGTCTCCATCTGAAACCGTATGGGCAGATCGAGAACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAGGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACAAGTTCTACTGATGATGGTAGGTCCATTGATCTGAACTTTGGTTCCACTGGTTTTACTAGTACTGACAGATCCATTGATCTAAATTTTGGGTTACGTGTCGGCTATGGTGTTGATGGATCGATCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

186

Amino Acids

21.06

Weight (kDa)

5.29

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	2.8e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	6 cut(s)	194, 316, 324, 337, 399, 460
AcsI	RAATTY	2 cut(s)	284, 418
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	93, 518
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	430
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	182, 494
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	2 cut(s)	129, 483
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	6 cut(s)	194, 316, 324, 337, 399, 460
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	284, 418
AsiGI	ACCGGT	1 cut(s)	93
Asp700I	GAANNNNTTC	2 cut(s)	233, 498
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	473, 533
AvaII	GGWCC	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	2 cut(s)	226, 551
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	204, 344, 443
BciT130I	CCWGG	2 cut(s)	131, 485
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	3 cut(s)	55, 131, 485
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	3 cut(s)	245, 331, 379
BmrFI	CCNGG	3 cut(s)	55, 131, 485
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	226, 551
BpmI	CTGGAG	2 cut(s)	113, 153
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 518
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	131, 485
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	93, 518
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	2 cut(s)	44, 486
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	93
BshVI	ATCGAT	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	54, 94
BslI	CCNNNNNNNGG	2 cut(s)	93, 518
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	455
BspLI	GGNNCC	3 cut(s)	245, 331, 379
BspPI	GGATC	6 cut(s)	194, 316, 324, 337, 399, 460
BspTI	CTTAAG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	388
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	131, 485
Bst4CI	ACNGT	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	431
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	131, 485
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	53, 129, 483
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	226, 551
BstX2I	RGATCY	4 cut(s)	186, 308, 329, 404
BstYI	RGATCY	4 cut(s)	186, 308, 329, 404
Bsu15I	ATCGAT	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	381
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	5 cut(s)	70, 460, 514, 518, 541
CviJI	RGCY	6 cut(s)	14, 53, 82, 136, 260, 438
CviKI_1	RGCY	6 cut(s)	14, 53, 82, 136, 260, 438
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	129, 483
EcoT22I	ATGCAT	1 cut(s)	519
FaeI	CATG	5 cut(s)	73, 463, 517, 521, 544
FaiI	YATR	7 cut(s)	71, 210, 441, 461, 515, 519, 542
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	5 cut(s)	69, 459, 513, 517, 540
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	113, 153
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 94
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	5 cut(s)	73, 463, 517, 521, 544
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaII	CCGG	2 cut(s)	54, 94
HphI	GGTGA	2 cut(s)	473, 533
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	201, 291, 369, 556
Hpy188III	TCNNGA	5 cut(s)	170, 220, 247, 263, 314
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	3 cut(s)	231, 294, 430
HpyCH4V	TGCA	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	3 cut(s)	231, 294, 430
Hsp92II	CATG	5 cut(s)	73, 463, 517, 521, 544
HspAI	GCGC	1 cut(s)	152
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	3 cut(s)	231, 294, 430
MaeIII	GTNAC	1 cut(s)	426
MboII	GAAGA	2 cut(s)	226, 556
MflI	RGATCY	4 cut(s)	186, 308, 329, 404
MluCI	AATT	4 cut(s)	5, 284, 322, 418
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	9 cut(s)	22, 25, 29, 137, 261, 263, 273, 464, 517
Mph1103I	ATGCAT	1 cut(s)	519
MroXI	GAANNNNTTC	2 cut(s)	233, 498
MseI	TTAA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	2 cut(s)	54, 94
MspR9I	CCNGG	3 cut(s)	55, 131, 485
MvaI	CCWGG	2 cut(s)	131, 485
MwoI	GCNNNNNNNGC	1 cut(s)	79
NciI	CCSGG	1 cut(s)	55
NlaIII	CATG	5 cut(s)	73, 463, 517, 521, 544
NlaIV	GGNNCC	3 cut(s)	245, 331, 379
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	1 cut(s)	73
PdmI	GAANNNNTTC	2 cut(s)	233, 498
PfeI	GAWTC	2 cut(s)	123, 178
PfoI	TCCNGGA	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	431
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	129, 483
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	129, 483
PspN4I	GGNNCC	3 cut(s)	245, 331, 379
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	4 cut(s)	186, 308, 329, 404
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	3 cut(s)	55, 131, 485
SetI	ASST	6 cut(s)	138, 234, 255, 297, 359, 433
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	155, 254
SmoI	CTYRAG	2 cut(s)	155, 254
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	4 cut(s)	5, 284, 322, 418
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	3 cut(s)	53, 129, 483
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	3 cut(s)	234, 297, 433
TaqI	TCGA	3 cut(s)	219, 315, 455
TasI	AATT	4 cut(s)	5, 284, 322, 418
TatI	WGTACW	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	2 cut(s)	284, 418
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	2 cut(s)	233, 498
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.