Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008280.1

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

28677 .. 29347

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008280.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggaaccacgaactctgcaactaatggagttacaaacccagcaacaaatggaattacaagcccagcaaccaactgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccagatcaactaagaatcgtccaggtgctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatctgccttcaactgcaacaatatgggcagatcgaggacaagaatgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaatttcggaacgttcgggagattgaaacccttccactattccccatgcatggtgaggacatctttggcaacatgaagactacttccgagggaggtagcggctatggcggtggctttcgcatttcccttgagctcagcctcaactcctacagagatgcagacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

166

Amino Acids

19.09

Weight (kDa)

5.12

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AciI	CCGC	2 cut(s)	429, 438
AclI	AACGTT	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	141, 380
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	230, 245, 328, 356
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw21I	GWGCWC	1 cut(s)	465
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	281, 360
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	274, 413
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	478
BglI	GCCNNNNNGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	99, 430
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	2 cut(s)	100, 431
Bme1390I	CCNGG	2 cut(s)	103, 179
BmiI	GGNNCC	2 cut(s)	6, 293
BmrFI	CCNGG	2 cut(s)	103, 179
BmsI	GCATC	2 cut(s)	99, 475
BpiI	GAAGAC	2 cut(s)	274, 413
BpmI	CTGGAG	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	287, 479
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 380
Bse118I	RCCGGY	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	141, 380
BseMII	CTCAG	2 cut(s)	66, 478
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	102, 142
BslI	CCNNNNNNNGG	2 cut(s)	141, 380
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	160, 234, 264
Bsp1720I	GCTNAGC	1 cut(s)	464
BspACI	CCGC	2 cut(s)	429, 438
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	67, 477
BspLI	GGNNCC	2 cut(s)	6, 293
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	3 cut(s)	160, 234, 264
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	179
BstDEI	CTNAG	4 cut(s)	75, 167, 464, 498
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	163, 237, 267
BstMBI	GATC	3 cut(s)	160, 234, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 435, 494
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	101, 177
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	274, 413
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	4 cut(s)	376, 380, 403, 493
CviJI	RGCY	9 cut(s)	62, 101, 130, 308, 432, 444, 463, 468, 497
CviKI_1	RGCY	9 cut(s)	62, 101, 130, 308, 432, 444, 463, 468, 497
DdeI	CTNAG	4 cut(s)	75, 167, 464, 498
DpnI	GATC	3 cut(s)	162, 236, 266
DpnII	GATC	3 cut(s)	160, 234, 264
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	4 cut(s)	379, 383, 406, 496
FaiI	YATR	7 cut(s)	192, 258, 377, 381, 404, 435, 494
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	375, 379, 402, 492
Fnu4HI	GCNGC	2 cut(s)	99, 430
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	99, 430
GluI	GCNGC	2 cut(s)	99, 430
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	102, 142
Hin1II	CATG	4 cut(s)	379, 383, 406, 496
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	2 cut(s)	102, 142
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	339, 418
Hpy188III	TCNNGA	5 cut(s)	218, 230, 295, 311, 347
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	251, 322, 371
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	4 cut(s)	19, 250, 379, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 435, 494
HpyF3I	CTNAG	4 cut(s)	75, 167, 464, 498
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	379, 383, 406, 496
Kzo9I	GATC	3 cut(s)	160, 234, 264
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	99, 475
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	162, 236, 266
MboI	GATC	3 cut(s)	160, 234, 264
MboII	GAAGA	2 cut(s)	274, 418
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	2 cut(s)	53, 332
MlyI	GAGTC	1 cut(s)	142
Mph1103I	ATGCAT	1 cut(s)	381
MroXI	GAANNNNTTC	2 cut(s)	281, 360
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	102, 142
MspR9I	CCNGG	2 cut(s)	103, 179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	127, 435, 494
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	160, 234, 264
NlaIII	CATG	4 cut(s)	379, 383, 406, 496
NlaIV	GGNNCC	2 cut(s)	6, 293
NsiI	ATGCAT	1 cut(s)	381
PdmI	GAANNNNTTC	2 cut(s)	281, 360
PfeI	GAWTC	2 cut(s)	171, 226
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	100, 431
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	6, 293
PsuI	RGATCY	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	99, 430
Sau3AI	GATC	3 cut(s)	160, 234, 264
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	103, 179
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	6 cut(s)	183, 201, 303, 345, 427, 465
SfaNI	GCATC	2 cut(s)	99, 475
SfcI	CTRYAG	1 cut(s)	478
SmlI	CTYRAG	2 cut(s)	302, 458
SmoI	CTYRAG	2 cut(s)	302, 458
Sse9I	AATT	2 cut(s)	53, 332
SsiI	CCGC	2 cut(s)	429, 438
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	101, 177
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	53, 332
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	419
XapI	RAATTY	1 cut(s)	332
XmnI	GAANNNNTTC	2 cut(s)	281, 360
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.