Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002554

Physical Location & Seq

Genomic Coordinates Forward (+)

42019609 .. 42019902

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGAACCACGAACTCTGCAGTTAATGGAGCTTCAAACCCAGCAACAAATGGAACTACAAGCCCGGCAACCGGAGGAGGGGAGGAAGCAACCAAGCGGCGGGCGTAGTGCCAATACGCCTATCGGGCGACCTAATAACCGGTGGACTCCCACACCAAATCAACTACGAATCCTCAAGGGGCTTTACTATGACAAGGATCTCAAGTACCCAACTCCGGAGCAGATTCAAGAGATCTATCTCTATACGAAACGGTATGGGCAGATTGAGGACAAGAACGTCTTCTTTTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

97

Amino Acids

11.63

Weight (kDa)

9.3

Isoelectric Point (pI)

70.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	46 - 97	3.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002554)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322991 RchiOBHm_Chr1g0329051 RchiOBHm_Chr1g0344211 RchiOBHm_Chr1g0364731 RchiOBHm_Chr1g0365701 RchiOBHm_Chr1g0374751 RchiOBHm_Chr2g0114251 RchiOBHm_Chr2g0121171 RchiOBHm_Chr2g0121201 RchiOBHm_Chr2g0124881 RchiOBHm_Chr2g0127381 RchiOBHm_Chr2g0130101 RchiOBHm_Chr2g0130341 RchiOBHm_Chr2g0130501 RchiOBHm_Chr2g0130561 RchiOBHm_Chr2g0131181 RchiOBHm_Chr2g0135911 RchiOBHm_Chr2g0142221 RchiOBHm_Chr2g0145561 RchiOBHm_Chr2g0147241 RchiOBHm_Chr2g0147511 RchiOBHm_Chr2g0149401 RchiOBHm_Chr2g0152631 RchiOBHm_Chr3g0467691 RchiOBHm_Chr5g0064861 RchiOBHm_Chr6g0260891 RchiOBHm_Chr7g0183851 RchiOBHm_Chr7g0189051 RchiOBHm_Chr7g0193531 RchiOBHm_Chr7g0199831
rosa_multiflora	Rmu_sc0000210.1_g000006 Rmu_sc0000772.1_g000031 Rmu_sc0001207.1_g000019 Rmu_sc0002011.1_g000004 Rmu_sc0002709.1_g000040 Rmu_sc0006171.1_g000017 Rmu_sc0007537.1_g000001 Rmu_sc0008280.1_g000010 Rmu_sc0021196.1_g000001
rosa_roxburghii	Rroxscaffold_7G00197670
rosa_rugosa	Rorug03G0117700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	2 cut(s)	96, 99
AclWI	GGATC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	4 cut(s)	70, 77, 98, 214
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	35, 227
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AlwI	GGATC	1 cut(s)	204
Aor13HI	TCCGGA	1 cut(s)	214
AsiGI	ACCGGT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	64
BfaI	CTAG	1 cut(s)	292
BfmI	CTRYAG	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	2 cut(s)	158, 185
BpuMI	CCSGG	1 cut(s)	64
BsaWI	WCCGGW	3 cut(s)	70, 138, 214
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 77, 98, 214
Bse118I	RCCGGY	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	214
BseLI	CCNNNNNNNGG	4 cut(s)	70, 77, 98, 214
BseRI	GAGGAG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	138
BsiSI	CCGG	4 cut(s)	64, 71, 139, 215
BslI	CCNNNNNNNGG	4 cut(s)	70, 77, 98, 214
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	196, 231
BspACI	CCGC	2 cut(s)	96, 99
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssMI	GATC	2 cut(s)	196, 231
Bst4CI	ACNGT	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	101
BstKTI	GATC	2 cut(s)	199, 234
BstMBI	GATC	2 cut(s)	196, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	196, 231
BstYI	RGATCY	2 cut(s)	196, 231
Cac8I	GCNNGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	138
CviJI	RGCY	3 cut(s)	31, 62, 181
CviKI_1	RGCY	3 cut(s)	31, 62, 181
CviQI	GTAC	1 cut(s)	205
DpnI	GATC	2 cut(s)	198, 233
DpnII	GATC	2 cut(s)	196, 231
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
FaiI	YATR	3 cut(s)	189, 243, 255
FalI	AAGNNNNNCTT	1 cut(s)	263
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	292
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	43
HapII	CCGG	4 cut(s)	64, 71, 139, 215
HinfI	GANTC	3 cut(s)	145, 168, 223
HpaII	CCGG	4 cut(s)	64, 71, 139, 215
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	215, 227
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	276
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	196, 231
LmnI	GCTCC	2 cut(s)	28, 217
LpnPI	CCDG	5 cut(s)	53, 77, 84, 152, 228
MaeI	CTAG	1 cut(s)	292
MaeII	ACGT	1 cut(s)	276
MalI	GATC	2 cut(s)	198, 233
MboI	GATC	2 cut(s)	196, 231
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	2 cut(s)	196, 231
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	67, 70, 75, 182, 259
MroI	TCCGGA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	23
MspI	CCGG	4 cut(s)	64, 71, 139, 215
MspR9I	CCNGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	2 cut(s)	196, 231
NlaIV	GGNNCC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	168, 223
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	196, 231
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	196, 231
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	3 cut(s)	33, 133, 279
SfcI	CTRYAG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	173, 200
SmoI	CTYRAG	2 cut(s)	173, 200
SsiI	CCGC	2 cut(s)	96, 99
SspMI	CTAG	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	168, 223
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.